Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13b07
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.1  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   3.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.2  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 257 SNTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICG 400
           S  S F  + H+  ++L  GV A+  A   AG++   +GT+++G + G
Sbjct: 263 SKDSKFN-MVHIQNSTLAGGV-AIGTA---AGMMCQPVGTLIVGALAG 305


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 49  NKPQENIKIFGISNSFNLLLDIEDGEDEAISSSHST 156
           NKP + +++F I+ +    +   DG++E   +S ST
Sbjct: 93  NKPFKRLELFNITTTTIHSIHSIDGDEENGLTSEST 128


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 338 FKNAGLLVGCIGTMLIGLICGHVIHILVKTSQQL 439
           F+   LLV  I  +L+GLI G +  +   T Q +
Sbjct: 60  FRKNMLLVFTIAAVLVGLILGFLGRLANPTPQSI 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,743
Number of Sequences: 438
Number of extensions: 4314
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)