Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13b06
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 36 0.007
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ... 29 0.84
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.5
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 1.9
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 2.6
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 27 2.6
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 27 3.4
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 4.5
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 25 7.9
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 35.5 bits (78), Expect = 0.007
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 414 EKRGDREVENLFKILEKIT-EIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYL 590
E+R RE E + LE+ E K + ER +K EK+ + L EE EK L
Sbjct: 643 EQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRIL 702
Query: 591 ETQKVCQKQIKSNQELRKRE 650
E +K +K K +E R+RE
Sbjct: 703 EERKRREKLDKEEEERRRRE 722
>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 28.7 bits (61), Expect = 0.84
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 519 ALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDDMN 677
+LPVL ++LEQ+ E LEK + +K QEL+ + KF D +N
Sbjct: 72 SLPVLLDQLEQSE---ESLEKQVDVLRSSMEKDETRIQELKSMLYSKFHDQIN 121
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +3
Query: 525 PVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKRE 650
P L + +++ L L ++ + YLE KV ++ ++SN++ K++
Sbjct: 569 PNLFQHVDEKLRLEKKEQLSYLEILKVIEQMLESNEQKFKKQ 610
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 414 EKRGDREVENLFKILEKITEI 476
EK + E+EN+ KI EK+TE+
Sbjct: 779 EKEANHELENIEKIEEKLTEV 799
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 426 DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDY-LETQK 602
+REVENL K L+K ++ + E+E+ + E+ E++ ++L KD E
Sbjct: 144 EREVENLRKELDKYKDLVETEAEK-------RAAITKEECEKSWLEQQKLYKDMEQENAS 196
Query: 603 VCQKQIKSNQELRKREWD 656
QK +EL+ + D
Sbjct: 197 TIQKLTSKIRELQASQLD 214
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/86 (17%), Positives = 37/86 (43%)
Frame = +3
Query: 426 DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKV 605
++ V++ ++ K E+ ++ S + N+ +K + + D QKV
Sbjct: 94 EKPVQSTTEVELKTNELAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKV 153
Query: 606 CQKQIKSNQELRKREWDKFIDDMNFK 683
+K + E ++ W K+I + + +
Sbjct: 154 LKKNKLNTLEQAQQNWSKYIKEQDIQ 179
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 504 KSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKS 626
KS +LP L E+ E+ +LEK++ E+ + ++ + S
Sbjct: 499 KSQQKSLPYLEEQYEKYRAKAADLEKEFSESTTLLKRDLSS 539
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 651 ILFFSILGYFLFASGKPFVFQDNLFPILHINSR 553
++F ++ Y L ASG+ ++F I H+N+R
Sbjct: 1258 LIFAGVIYYLLAASGQNYIFISMTNFISHLNNR 1290
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 471 EIKDNESERIRKSGHNALPVLSEKLEQA 554
E + ES+RIR+ + +PV+ EK++++
Sbjct: 12 EKRKTESQRIREKYPDRIPVICEKVDKS 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,411
Number of Sequences: 5004
Number of extensions: 56748
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -