Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13b06
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1084 - 25928373-25928426,25928551-25928652,25928913-259290... 31 0.66
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 31 1.1
02_04_0642 + 24686792-24686913,24687027-24687090,24688282-246884... 30 1.5
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 29 2.6
01_01_0402 + 3046504-3046582,3047265-3047487,3047954-3048107,304... 29 2.6
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 29 3.5
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 29 4.6
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137... 29 4.6
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 28 6.1
12_02_0778 + 23074463-23076411,23076859-23077072,23077824-230778... 28 8.1
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142... 28 8.1
>12_02_1084 -
25928373-25928426,25928551-25928652,25928913-25929039,
25929292-25930730,25931430-25931447
Length = 579
Score = 31.5 bits (68), Expect = 0.66
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = -2
Query: 208 FLYSLDFTIEVEMYLELSDLIFHQNRNWKE*ISMLLST*DKPATTYTILE*SKRLIHTTF 29
++ S+ E +++ E + I N+NWKE IS + + D+ +T Y+++ S+ + ++
Sbjct: 23 YITSMRREFETKLW-ENQNCISTLNKNWKEKISKIAALRDELSTIYSVVSASESGVFSSH 81
Query: 28 ISDEKNSE 5
S EK E
Sbjct: 82 GSHEKVEE 89
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 450 KILEKITEIKDNESERIRKSGHNALPVLS-EKLEQALNLCEELEKDYL-ETQKVCQKQIK 623
K+LE + K++ + + +G A ++ + + L + E L T K+C ++K
Sbjct: 364 KLLETCRDTKEDYTMSVDSNGDAAAQCINIDPVPILLEVSNEANSTQLVNTNKLCLVKVK 423
Query: 624 SNQELRKREWDKFIDD 671
S ++L+KR+ +K D
Sbjct: 424 STKDLKKRKKEKVDGD 439
>02_04_0642 +
24686792-24686913,24687027-24687090,24688282-24688401,
24688685-24688774,24688848-24688986,24689664-24689786,
24689884-24689942
Length = 238
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 531 LSEKLEQALNLCEELEKDY--LETQKVCQKQIKSNQ-ELRKREWDKFIDDMNFK 683
L +KLE A N EEL+K+ LE Q CQ+ + S+ EL K K D NF+
Sbjct: 126 LRKKLEDANNESEELQKELSSLERQAECQRNLDSSMAELLKVFESKAFQD-NFQ 178
>01_06_0847 +
32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 438 ENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLE-QALNLCEELEKDYLETQKVCQK 614
ENL + LEK+ +KD S K G + V++E + L +L+K L+ K K
Sbjct: 345 ENLQRKLEKLCAVKDTTS--FGKHGQQRIDVVTEGANIRLLKEKLKLKKQQLKHAKNVSK 402
Query: 615 QIKSNQELRKREWDKFIDD 671
K+ L +RE + D
Sbjct: 403 LDKAKNALVRRELQRLKQD 421
>01_01_0402 +
3046504-3046582,3047265-3047487,3047954-3048107,
3048253-3048355,3048554-3048738,3048972-3049051,
3049433-3049511,3050015-3050096,3050221-3050279,
3050379-3050684,3050825-3050989
Length = 504
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 492 ERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDD 671
E ++ S N S + EQA+ + +E + + ++VC+ I + E E D +D+
Sbjct: 21 EALKSSVRNT--AASRRREQAIAIGKERREALIRAKRVCRAPISGSDEAEMEEGDMVVDE 78
>10_07_0176 - 13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 390 YVLVDCYKLFIL*ILCTTDLKLFQHILYLSIQKW 289
YVL+ + F L +L + LF LYLSIQ+W
Sbjct: 1015 YVLMSTF-FFYLTLLLVPIIALFGDFLYLSIQRW 1047
>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 202 KEKNWA*SMTMTELSREIGEI-WSRLFDHRPFLNGEIKYMLKEFE 333
KEKN + S M +S +I ++ WS L D + F EI M+ +F+
Sbjct: 2124 KEKNKSPSFAM-RVSLKINKVVWSMLADGKSFAEAEINDMIYDFD 2167
>02_04_0490 -
23411742-23412944,23413071-23413595,23413666-23413747,
23413841-23414050,23414371-23414523,23415335-23415447,
23415476-23415622
Length = 810
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 513 HNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSN-QELRKREWDKFIDDMNFKCP 689
H L +L+ +L L + ++D + K C K + N ELR+ +W+K +D+++ C
Sbjct: 537 HLMLTILTITNSLSLAL-QRKDQDIVNAMK-CVKSTRLNLDELRREKWEKVLDEVSDFCD 594
Query: 690 R 692
+
Sbjct: 595 K 595
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 453 ILEKITEIKDNESERIRKSGHNALPVLSEKLEQAL 557
+L+KI+ I N+ + K HN +EKLE+ L
Sbjct: 523 VLQKISPINGNQEAELIKGEHNISKDRAEKLEKGL 557
>12_02_0778 +
23074463-23076411,23076859-23077072,23077824-23077887,
23077930-23078008,23078181-23078303,23078805-23078919
Length = 847
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 537 EKLEQALNLCEELEKDYLETQKVC 608
EK E+AL LCE+++ ++ +VC
Sbjct: 398 EKYEEALKLCEKMKSMRIQLDRVC 421
>01_05_0309 - 20713774-20713818,20713838-20713915,20714044-20714222,
20714296-20714556,20715222-20715393,20715501-20715662,
20716435-20716863,20717729-20717785,20717872-20718842,
20719098-20719182,20719269-20719637,20719756-20720001,
20720090-20720362,20720663-20720827,20721328-20721556,
20721727-20722168,20723152-20724138,20724352-20724517,
20725070-20725728,20725820-20726186
Length = 2113
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = -1
Query: 431 SIASLFL*NSN*IIMCWLIVTNYSFYKYYVLQTSNSFSIYFISPFRNGRWSNNLDQISPI 252
S+ + FL S + L+ + SF++ VL+ SNS ++++S R+ +N+ +Q S I
Sbjct: 1472 SVVAKFLMGSLHFVSSLLVKLHASFFREKVLKKSNSSVLFWLSQPRSN--NNSHEQFSSI 1529
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,342,861
Number of Sequences: 37544
Number of extensions: 275771
Number of successful extensions: 818
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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