Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13b06
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 32 0.34
U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical pr... 30 1.4
U55369-6|ABO16439.1| 476|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical p... 29 3.2
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p... 29 3.2
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 29 3.2
AC024869-2|AAK68603.2| 542|Caenorhabditis elegans Hypothetical ... 29 3.2
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 3.2
AC006625-4|AAK68276.1| 446|Caenorhabditis elegans Hypothetical ... 29 3.2
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 29 4.2
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 29 4.2
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 29 4.2
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical ... 29 4.2
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 29 4.2
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 29 4.2
Z92824-6|CAB07309.1| 257|Caenorhabditis elegans B0413.5 protein. 28 5.5
U41018-2|AAA82325.2| 260|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF106587-1|AAC78226.1| 849|Caenorhabditis elegans Msh (muts hom... 28 5.5
Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical pr... 28 7.3
AC024810-9|AAF60766.1| 547|Caenorhabditis elegans Hypothetical ... 28 7.3
Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical pr... 27 9.6
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 27 9.6
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 27 9.6
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.34
Identities = 24/69 (34%), Positives = 32/69 (46%)
Frame = +3
Query: 456 LEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQE 635
L KI ESE ++K+G N V K E+ EE +K E QK +K K +E
Sbjct: 706 LAKIENKYKKESEEVKKTGKNKDKVEKTK-EEVEKAKEEFQKVKEEFQKEVEKVKKVEKE 764
Query: 636 LRKREWDKF 662
L K + F
Sbjct: 765 LEKAKESDF 773
>U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical
protein K07C11.9 protein.
Length = 642
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 438 ENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQ 551
E FK+LE+ EI++N +++ GH A + EK+++
Sbjct: 162 EFFFKVLERCHEIRENCRNMVQEQGHLAAFEVMEKMQK 199
>U55369-6|ABO16439.1| 476|Caenorhabditis elegans Hypothetical
protein C18C4.1b protein.
Length = 476
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 438 ENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQ 617
E L ++EK+ + N + K+ L ++E++ + L ELEKDY + ++
Sbjct: 23 ETLTTVIEKV---QTNHEKISTKAKPRPLSAINEEIREYDQLSRELEKDYRRSMRI---- 75
Query: 618 IKSNQELRKREW 653
+ + EL + W
Sbjct: 76 VDDDFELARTHW 87
>Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical
protein F45G2.2b protein.
Length = 390
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 516 NALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELR 641
N + L L + ++ EELE+D LE +K+ K + ELR
Sbjct: 244 NLISKLQAMLRKCISRIEELEEDLLEERKLRMKAERQFNELR 285
>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
protein F45G2.2a protein.
Length = 1235
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 516 NALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELR 641
N + L L + ++ EELE+D LE +K+ K + ELR
Sbjct: 1089 NLISKLQAMLRKCISRIEELEEDLLEERKLRMKAERQFNELR 1130
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +3
Query: 414 EKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPV-LSEKLEQALNLCEELEK-DY 587
E + R+ + I ++I + + E + K GH L L+E ++ +L E+E+ ++
Sbjct: 365 ESQMRRKKVEIMLIRKEIAKAQKQLREALGKFGHEELTKKLAEAEDKRESLNIEIEEIEH 424
Query: 588 LETQKVCQKQIKSNQELRKREWDKF 662
++ + + +K K +ELR E +KF
Sbjct: 425 VQLKALRKKYEKLTKELRNEEEEKF 449
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +3
Query: 438 ENLFKILEKITEIKDN-ESERIRKSGH-NALPVLSEKLEQALNLCEELEKDYLETQKVCQ 611
E L + K E+K+N +E R +G VL EKL+QAL E +K+ LE + +
Sbjct: 321 EELQSMHLKNKELKNNVTTENSRATGAVQEAQVLQEKLQQALKELEGKKKELLEQENAHK 380
Query: 612 KQIKSNQELRKREWDKFI 665
++ ++ K+ K I
Sbjct: 381 LRMDQFEDDTKKRHKKEI 398
>AC024869-2|AAK68603.2| 542|Caenorhabditis elegans Hypothetical
protein Y75B7AL.1 protein.
Length = 542
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = -2
Query: 673 ISSINLSHSLFLNSWLLFICFWQTFCVSR*SFSNSSHKFKACSSFSLSTGNALWPLFLIR 494
++S++ + + L +L + FW T + F + K ++ L N + P F
Sbjct: 66 VTSLDKNRGVVLAVSMLALAFWDTVLLWSAFFYYGAKKLNVLNNLYLDRLNTIIPYFHAL 125
Query: 493 SDSLSLISV--IFSKILNRFSTSRSPLFSYKTQI 398
S + S+ + + + RF +R P + +T +
Sbjct: 126 SHVANTASIWCVVAITIQRFMATRDPFRTSRTTV 159
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +3
Query: 435 VENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQK 614
+E+L KI ++I +DN + +I +N PV+ K E E+E + V
Sbjct: 1953 IESLDKIKDQINNARDNINRQIDNLNYNQTPVVVPK-ESTKTPLNEIEDAVRQASTVVSD 2011
Query: 615 QIKSNQEL 638
++ + ++L
Sbjct: 2012 ELCNTEKL 2019
>AC006625-4|AAK68276.1| 446|Caenorhabditis elegans Hypothetical
protein C55B7.5 protein.
Length = 446
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +3
Query: 414 EKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLE 593
E+ GD + ENL +E++ + I KS ++ + S+K+E + EE+ ++ +
Sbjct: 276 EEEGDDDEENLNNSVEELDSDDYASDDNIEKSNNSDQQLKSKKIETQVIKVEEIVEETVT 335
Query: 594 TQKVCQKQ 617
V +K+
Sbjct: 336 KTTVKRKK 343
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +3
Query: 426 DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLE 548
D EVENL L I D G P+L EKL+
Sbjct: 373 DSEVENLLDYLSTAMNISDKVFSEFMVVGEETTPLLKEKLK 413
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +3
Query: 426 DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLE 548
D EVENL L I D G P+L EKL+
Sbjct: 373 DSEVENLLDYLSTAMNISDKVFSEFMVVGEETTPLLKEKLK 413
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 495 RIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQ-KVCQKQIKSNQELRKREWDK 659
R+R G NA+ VL++K+++ + K E + +K +KS+Q+ ++R +K
Sbjct: 508 RLRSVGDNAIDVLNQKIDETKEWKRKSRKATREDEMNSMKKSLKSSQKNKERLAEK 563
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 495 RIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQ-KVCQKQIKSNQELRKREWDK 659
R+R G NA+ VL++K+++ + K E + +K +KS+Q+ ++R +K
Sbjct: 675 RLRSVGDNAIDVLNQKIDETKEWKRKSRKATREDEMNSMKKSLKSSQKNKERLAEK 730
>AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical
protein Y39B6A.10 protein.
Length = 256
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 468 TEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQK 614
+E D+ES++I S + +S KL+Q L + E LEK ++ +CQK
Sbjct: 89 SEASDDESQQI--STNFEFQSISGKLKQ-LKITENLEKSIIDYLALCQK 134
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 531 LSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDDMN 677
++EKL L L+ D+ Q ++QIK + E RE +KFI D +
Sbjct: 667 MTEKLTNIGRLAANLKTDFPPIQMAIEQQIKRDMERVVRE-EKFIRDQS 714
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 531 LSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDDMN 677
++EKL L L+ D+ Q ++QIK + E RE +KFI D +
Sbjct: 566 MTEKLTNIGRLAANLKTDFPPIQMAIEQQIKRDMERVVRE-EKFIRDQS 613
>Z92824-6|CAB07309.1| 257|Caenorhabditis elegans B0413.5 protein.
Length = 257
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 468 TEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQK 614
+E D+ES++I S + +S KL+Q L + E LEK ++ +CQK
Sbjct: 90 SEASDDESQQI--STNFXXQSISGKLKQ-LKITENLEKSIIDYLALCQK 135
>U41018-2|AAA82325.2| 260|Caenorhabditis elegans Hypothetical
protein ZK816.4 protein.
Length = 260
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 152 FDISSKSKLERINFNASKYVRQTCYNLHYSRVK*TADP 39
+D +S+ ER NAS Y TC + +VK ADP
Sbjct: 37 YDYNSEENFER-PLNASMYQPTTCGEVEQEKVKECADP 73
>AF106587-1|AAC78226.1| 849|Caenorhabditis elegans Msh (muts
homolog) family protein 2 protein.
Length = 849
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 477 KDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDY 587
K+N+ R+R + +SEKLEQ + E+L K Y
Sbjct: 438 KENKEIRVRVDFVPEIQEISEKLEQMERVAEKLRKKY 474
>Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical
protein T05F1.7 protein.
Length = 484
Score = 27.9 bits (59), Expect = 7.3
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +3
Query: 414 EKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLE 593
EKR +E K+ EKI +I+ + E +K+ + SE L++ L EL E
Sbjct: 377 EKREKEYLEKKEKLAEKIKQIEKSTDE--QKTELERIRKRSEFLKRQLKSYSELNLVQFE 434
Query: 594 TQKVCQKQIKSNQELR--KREWDKFIDDMN 677
+K I+ E+R K++W + I +N
Sbjct: 435 NEK-----IEKGTEIRMLKKQWHEQIMALN 459
>AC024810-9|AAF60766.1| 547|Caenorhabditis elegans Hypothetical
protein Y54E10A.12 protein.
Length = 547
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = +3
Query: 414 EKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLE 593
+K ++E +NL K+L++++ + + E +L EK ++EKD L
Sbjct: 119 QKIAEKE-KNLSKLLKELSIVDSSLKEEKASFEKTQSALLKEK--------GKIEKDKLM 169
Query: 594 TQKVCQKQIKSNQELRKRE 650
++ QKQ N E++K+E
Sbjct: 170 LREEAQKQASMNAEVQKKE 188
>Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical
protein F55D12.2 protein.
Length = 712
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 450 KILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEEL 575
+++E++ EI+ + ER+R SG VLS + ++ N EEL
Sbjct: 558 QMMERVNEIEKSLRERLRVSGKLNSIVLSTERKRLKNDIEEL 599
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 27.5 bits (58), Expect = 9.6
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Frame = +3
Query: 414 EKRGDR-EVENLFKILE----KITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELE 578
E+R DR + K L+ + KD +S+ R + ++ A NL E+L
Sbjct: 3005 ERRKDRFRASEILKFLQYHGYHVNCPKDEQSQNDRLKSEGERTSVEKRF--AYNLLEKLI 3062
Query: 579 KDYLETQKVCQKQIKSNQEL-RKREWDKFIDDMNF 680
YLE + K +K +QEL R+ + K D+ F
Sbjct: 3063 T-YLEQASLKMKSVKPSQELTRRNSFKKEGQDVKF 3096
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.5 bits (58), Expect = 9.6
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Frame = +3
Query: 414 EKRGDR-EVENLFKILE----KITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELE 578
E+R DR + K L+ + KD +S+ R + ++ A NL E+L
Sbjct: 3010 ERRKDRFRASEILKFLQYHGYHVNCPKDEQSQNDRLKSEGERTSVEKRF--AYNLLEKLI 3067
Query: 579 KDYLETQKVCQKQIKSNQEL-RKREWDKFIDDMNF 680
YLE + K +K +QEL R+ + K D+ F
Sbjct: 3068 T-YLEQASLKMKSVKPSQELTRRNSFKKEGQDVKF 3101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,530
Number of Sequences: 27780
Number of extensions: 294924
Number of successful extensions: 981
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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