Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13b06
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.90 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   2.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.4  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    21   8.4  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 453 ILEKITEIKDNESERIRKSG 512
           ILE I+ +KD+ +E I KSG
Sbjct: 183 ILESISYVKDDGTEGIAKSG 202


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 367 IIHFINTMYYRPQTLSAYTLSLHSEMDGGRIILTKFRQFL 248
           +IH        P  L AY   L+  +  G IIL K R+F+
Sbjct: 108 LIHLKEIEDTEPILLIAYIYHLYMGLLSGGIILRKKREFM 147


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 567 EELEKDYLETQKVCQKQIKSNQELRKREW-DKFIDDMNFKC 686
           EEL+K     +KVC K+  + +EL   ++  +F  D    C
Sbjct: 4   EELKKTIKNLRKVCSKKNDTPKELLDGQFRGEFPQDERLMC 44


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 223 SMTMTELSREIGEIWSR 273
           +MT+TEL+  + E W R
Sbjct: 141 NMTITELTDPVKEFWER 157


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 645 FFSILGYFLFASGKPFVFQDNL 580
           F SIL  FL+A G+  + + NL
Sbjct: 146 FLSILPIFLYALGEQPLTEQNL 167


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 645 FFSILGYFLFASGKPFVFQDNL 580
           F SIL  FL+A G+  + + NL
Sbjct: 184 FLSILPIFLYALGEQPLTEQNL 205


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 429  DRLSFPIKLKLNNYVLVDCY 370
            DRL +P  +    YV VD Y
Sbjct: 1103 DRLPYPWTMDNERYVKVDMY 1122


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 356 YKYYVLQTSNSFSIYFISPFRNGRWSNNLD 267
           Y Y  + T +  + +F S  RN   S NLD
Sbjct: 27  YGYKNIMTLSQDTSHFASLVRNASVSGNLD 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,462
Number of Sequences: 438
Number of extensions: 3753
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)