Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13b04
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 290 4e-79
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 1.8
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 2.3
AY835433-1|AAX37360.1| 331|Caenorhabditis elegans bZIP transcri... 28 4.1
AY835432-1|AAX37359.1| 467|Caenorhabditis elegans bZIP transcri... 28 4.1
AF016440-2|AAB65905.2| 331|Caenorhabditis elegans Abnormal ever... 28 4.1
AF016440-1|ABA54419.1| 467|Caenorhabditis elegans Abnormal ever... 28 4.1
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 290 bits (712), Expect = 4e-79
Identities = 141/180 (78%), Positives = 158/180 (87%), Gaps = 1/180 (0%)
Frame = +2
Query: 29 MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 205
MA N N++KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60
Query: 206 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 385
LGE+GRRI+ELTSVVQKRF E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRA
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120
Query: 386 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 565
CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LR
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
protein C05C10.2b protein.
Length = 1553
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 20 VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 133
+A +I KK F GDG F E E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
protein C05C10.2a protein.
Length = 1551
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 20 VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 133
+A +I KK F GDG F E E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 194 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 313
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 116 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 277
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 116 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 277
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>AY835433-1|AAX37360.1| 331|Caenorhabditis elegans bZIP
transcription factor FOS-1b protein.
Length = 331
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 79 NSISNKFSLL*NIVHGHDCNGSREKK 2
N+I NK + L N + HDC SRE++
Sbjct: 74 NNIRNKLNSLKNYLETHDCKLSREER 99
>AY835432-1|AAX37359.1| 467|Caenorhabditis elegans bZIP
transcription factor FOS-1a protein.
Length = 467
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 79 NSISNKFSLL*NIVHGHDCNGSREKK 2
N+I NK + L N + HDC SRE++
Sbjct: 210 NNIRNKLNSLKNYLETHDCKLSREER 235
>AF016440-2|AAB65905.2| 331|Caenorhabditis elegans Abnormal
eversion of vulva protein5, isoform a protein.
Length = 331
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 79 NSISNKFSLL*NIVHGHDCNGSREKK 2
N+I NK + L N + HDC SRE++
Sbjct: 74 NNIRNKLNSLKNYLETHDCKLSREER 99
>AF016440-1|ABA54419.1| 467|Caenorhabditis elegans Abnormal
eversion of vulva protein5, isoform b protein.
Length = 467
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 79 NSISNKFSLL*NIVHGHDCNGSREKK 2
N+I NK + L N + HDC SRE++
Sbjct: 210 NNIRNKLNSLKNYLETHDCKLSREER 235
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,461,904
Number of Sequences: 27780
Number of extensions: 277371
Number of successful extensions: 824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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