Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a23
         (251 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.26 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   9.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 0.26
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 122 CRQRCPQRYHPGCYS 166
           C ++CP+R+ P C S
Sbjct: 106 CMRKCPRRHRPVCAS 120


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 109 KKNCCQDY 86
           KKNCC+ +
Sbjct: 397 KKNCCRSW 404


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 109 KKNCCQDY 86
           KKNCC+ +
Sbjct: 397 KKNCCRSW 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,191
Number of Sequences: 438
Number of extensions: 880
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)