Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a12
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    29   0.42 
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   3.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   6.9  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    24   9.1  

>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 444 FFFHFGPNTKCYL 406
           FFF+FGPNT C++
Sbjct: 468 FFFNFGPNTTCFV 480


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 60  IGVLDSSKCECGADIGDLNHIILSCPLF 143
           +G    S   C A +  LN+ I SCPLF
Sbjct: 445 LGSCPRSSDSCRAILDILNNYIFSCPLF 472


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 63  GVLDSSKCECGADIGDLNHIILSCPL 140
           G +  ++   G D+  +NH++ +CPL
Sbjct: 389 GDVSLAQISSGGDLKKINHVLDTCPL 414


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 192 EKEY*VMIKNYKEVNDQKGDMKE 124
           +KE    +K+Y+E +D + D+KE
Sbjct: 138 KKEKRAALKHYREASDNEEDLKE 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,503,449
Number of Sequences: 5004
Number of extensions: 23012
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)