Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a12
         (445 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ084244-1|AAZ31363.1|  758|Homo sapiens polycystic kidney disea...    29   5.5  
BC025665-1|AAH25665.1|  805|Homo sapiens polycystic kidney disea...    29   5.5  
AL139819-2|CAH72822.1|  805|Homo sapiens polycystic kidney disea...    29   5.5  
AF153474-1|AAF28108.1|  805|Homo sapiens polycystic kidney disea...    29   5.5  
AF094827-1|AAD08695.1|  710|Homo sapiens PKD2L protein.                29   5.5  
AF092170-1|AAD16101.1|  665|Homo sapiens polycystic kidney disea...    29   5.5  
AF073481-1|AAD41638.1|  805|Homo sapiens polycystin-L protein.         29   5.5  
AF053316-1|AAD51859.1|  763|Homo sapiens polycystin-2 homolog pr...    29   5.5  

>DQ084244-1|AAZ31363.1|  758|Homo sapiens polycystic kidney disease
           2-like 1 variant protein.
          Length = 758

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 318 NPNPIFLPKPYLTYIF*FDFCFLTFILKVANNTWCWVQNE 437
           N N I  P  ++TY+F   F  L   L + N+T+  V+ E
Sbjct: 484 NANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEE 523


>BC025665-1|AAH25665.1|  805|Homo sapiens polycystic kidney disease
           2-like 1 protein.
          Length = 805

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 318 NPNPIFLPKPYLTYIF*FDFCFLTFILKVANNTWCWVQNE 437
           N N I  P  ++TY+F   F  L   L + N+T+  V+ E
Sbjct: 531 NANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEE 570


>AL139819-2|CAH72822.1|  805|Homo sapiens polycystic kidney disease
           2-like 1 protein.
          Length = 805

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 318 NPNPIFLPKPYLTYIF*FDFCFLTFILKVANNTWCWVQNE 437
           N N I  P  ++TY+F   F  L   L + N+T+  V+ E
Sbjct: 531 NANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEE 570


>AF153474-1|AAF28108.1|  805|Homo sapiens polycystic kidney disease
           2-like protein protein.
          Length = 805

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 318 NPNPIFLPKPYLTYIF*FDFCFLTFILKVANNTWCWVQNE 437
           N N I  P  ++TY+F   F  L   L + N+T+  V+ E
Sbjct: 531 NANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEE 570


>AF094827-1|AAD08695.1|  710|Homo sapiens PKD2L protein.
          Length = 710

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 318 NPNPIFLPKPYLTYIF*FDFCFLTFILKVANNTWCWVQNE 437
           N N I  P  ++TY+F   F  L   L + N+T+  V+ E
Sbjct: 436 NANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEE 475


>AF092170-1|AAD16101.1|  665|Homo sapiens polycystic kidney disease
           2 related protein protein.
          Length = 665

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 318 NPNPIFLPKPYLTYIF*FDFCFLTFILKVANNTWCWVQNE 437
           N N I  P  ++TY+F   F  L   L + N+T+  V+ E
Sbjct: 418 NANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEE 457


>AF073481-1|AAD41638.1|  805|Homo sapiens polycystin-L protein.
          Length = 805

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 318 NPNPIFLPKPYLTYIF*FDFCFLTFILKVANNTWCWVQNE 437
           N N I  P  ++TY+F   F  L   L + N+T+  V+ E
Sbjct: 531 NANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEE 570


>AF053316-1|AAD51859.1|  763|Homo sapiens polycystin-2 homolog
           protein.
          Length = 763

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 318 NPNPIFLPKPYLTYIF*FDFCFLTFILKVANNTWCWVQNE 437
           N N I  P  ++TY+F   F  L   L + N+T+  V+ E
Sbjct: 489 NANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEE 528


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,775,716
Number of Sequences: 237096
Number of extensions: 736648
Number of successful extensions: 1083
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)