Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a12
         (445 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros...    33   0.23 
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    31   0.53 
AY118355-1|AAM48384.1|  577|Drosophila melanogaster RE01566p pro...    31   0.71 
AE014134-2762|AAF53561.2|  577|Drosophila melanogaster CG17905-P...    31   0.71 

>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type I retrotransposable
            element  R1Dm.  ).
          Length = 1021

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 27   GHTCIPAHLATIGVLDSSKCECGADIGDLNHIILSCPLF 143
            GH    A L    + D++ C CG    D  HI+ +CPL+
Sbjct: 936  GHGSFNAFLHGRALSDTTACACGDPYEDWMHILCACPLY 974


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 9    LIRMRLGHTCIPAHLATIGVLDSSKCE-CGADIGDLNHIILSCP 137
            +IR+RLGHT I  H   +       C  C  DI  LNHI  SCP
Sbjct: 1135 IIRLRLGHTNI-THQHYLNPNSIPTCPFCQGDI-SLNHIFNSCP 1176


>AY118355-1|AAM48384.1|  577|Drosophila melanogaster RE01566p
           protein.
          Length = 577

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 114 LNRQCPHRTHTYCYPALRSSLDVPEYTCGLISS 16
           +N+ CP R++   +  + + L+V EY CG++ +
Sbjct: 405 VNQNCPSRSYPGIWELVMNQLEVGEYMCGMVDT 437


>AE014134-2762|AAF53561.2|  577|Drosophila melanogaster CG17905-PA
           protein.
          Length = 577

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 114 LNRQCPHRTHTYCYPALRSSLDVPEYTCGLISS 16
           +N+ CP R++   +  + + L+V EY CG++ +
Sbjct: 405 VNQNCPSRSYPGIWELVMNQLEVGEYMCGMVDT 437


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,444
Number of Sequences: 53049
Number of extensions: 229215
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1438687674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)