Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a12
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   4.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.0  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 15  RMRLGHTCIPAHLATIG 65
           ++ + HTCI  HL  +G
Sbjct: 92  KLHVSHTCIENHLKQLG 108


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +3

Query: 339 PKPYLTYIF*FDFCFLTFILKVANNTWCWV 428
           P P L Y+    +   TF+  + N    W+
Sbjct: 43  PNPSLHYLLALLYILFTFLALLGNGLVIWI 72


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 168 KNYKEVNDQKGDMKE 124
           +NY + ND+K D++E
Sbjct: 63  ENYWQCNDKKTDIEE 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,098
Number of Sequences: 438
Number of extensions: 1836
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)