Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a09
         (102 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf (diva...    27   1.8  
U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf (diva...    27   1.8  
U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf (diva...    25   7.2  
U40424-4|AAA81459.1|   73|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U40424-3|AAL02442.1|   73|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           a protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 23  FVFFISIFCLLSCEAIHCLIPIQ 91
           FV +++++CL+SCE I   + I+
Sbjct: 506 FVLYLALYCLVSCEIIPDTVSIR 528


>U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           b protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 23  FVFFISIFCLLSCEAIHCLIPIQ 91
           FV +++++CL+SCE I   + I+
Sbjct: 420 FVLYLALYCLVSCEIIPDTVSIR 442


>U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 2 protein.
          Length = 465

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = +2

Query: 23  FVFFISIFCLLSCEAIH 73
           F+ +++I+CL++CE ++
Sbjct: 417 FILYLAIYCLVACELMN 433


>U40424-4|AAA81459.1|   73|Caenorhabditis elegans Hypothetical
          protein C24A3.2a protein.
          Length = 73

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 2  VFLC*FNFVFFISIFCLLSC 61
          V+LC F  +  ISI C+L C
Sbjct: 19 VWLCFFGAILVISITCILWC 38


>U40424-3|AAL02442.1|   73|Caenorhabditis elegans Hypothetical
          protein C24A3.2b protein.
          Length = 73

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 2  VFLC*FNFVFFISIFCLLSC 61
          V+LC F  +  ISI C+L C
Sbjct: 19 VWLCFFGAILVISITCILWC 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,659
Number of Sequences: 27780
Number of extensions: 12329
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 12,740,198
effective HSP length: 15
effective length of database: 12,323,498
effective search space used: 221822964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)