Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a05
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    27   1.4  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   3.3  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    26   4.3  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   5.7  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   5.7  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   10.0 
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   10.0 
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    25   10.0 

>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 293 KEHLLSLENENRVKTGNMQPRVALGYGACHDLFVNATLLLDHRELIGVPEHFD 451
           K+  +S E  N    G++    AL YG C  +      + DH   I +P++ D
Sbjct: 72  KDATVSYELSNNANEGSLDLLGALQYGQCQGIPELVKFIKDHVGQIHMPQYKD 124


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 7/20 (35%), Positives = 18/20 (90%)
 Frame = +3

Query: 33  QFVENSAFLSHINSQIIVNN 92
           +++EN+ FL+H+N++++ +N
Sbjct: 185 KYLENNKFLTHLNNEVLHDN 204


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 17/73 (23%), Positives = 36/73 (49%)
 Frame = +1

Query: 37  LLKIRHFYLISTHKLL*TMS*RVPWGQVRILIIHTFHIFSERYLHSRIYHGRFPSEIRYN 216
           +L ++ F  ++ + L  T+   V  G + +L++H  +   + Y  S   H R+ +E   +
Sbjct: 121 MLVLQDFEALTPNLLARTIE-TVEGGGIVVLLLHKLNSLKQLYTMSMDIHSRYRTEAHSD 179

Query: 217 FVIYFSVLRYLLS 255
               F+  R++LS
Sbjct: 180 VTARFNE-RFILS 191


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 499 EEICKTFEKLLFSCDFVEMLW 437
           E +C   EK + SC   E+LW
Sbjct: 561 ESVCSILEKAVESCPKAEILW 581


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 452 RRNALVLQLIHDGLTITLHSQRGHGMHRSP 363
           RR    ++ IH G T TL   R H + + P
Sbjct: 316 RRTGASIRTIHRGKTSTLSGNRSHSILQKP 345


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 450 TKSQLKRSFSKVLHISSSMALQPRGSCQIPS 542
           T+ ++K+ F K      S++L  RG+ ++PS
Sbjct: 610 TEGEVKKLFIKAKIYFESLSLDERGNLKVPS 640


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 400 CIHKEVMACTVAQSNARLHI 341
           C+HK+ + C   QSN+ L I
Sbjct: 227 CLHKDELLCLDIQSNSTLKI 246


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 467 EEFLKSFTYFFKHGAAAERFMSNSKLYD 550
           +EF+ S + F  HG   E+     K+YD
Sbjct: 76  QEFINSLSVFSVHGNKEEKLKFAFKIYD 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,520
Number of Sequences: 5004
Number of extensions: 46374
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)