Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a05
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040642-3|AAN73872.2|  502|Caenorhabditis elegans Hypothetical ...    41   7e-04
Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical pr...    31   0.43 
AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine re...    28   5.2  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    27   6.9  
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    27   6.9  
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical pr...    27   9.1  
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec...    27   9.1  
AF082012-1|AAD03024.1|  437|Caenorhabditis elegans UDP-N-acetylg...    27   9.1  
AF016684-16|AAB66213.1|  506|Caenorhabditis elegans Hypothetical...    27   9.1  

>AF040642-3|AAN73872.2|  502|Caenorhabditis elegans Hypothetical
           protein C50D2.7 protein.
          Length = 502

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
 Frame = +2

Query: 212 TILSFILVFYAIYYRKTDIGDVRLSPVK-EHLLSLENENR-VKTGNMQPRVALGYGACHD 385
           ++L FI+ ++  YY        RLS    E  + L  E   VK G M  +  +G+    D
Sbjct: 21  SVLFFIVPYWYSYYNDQH----RLSSYSVETAMFLSWERAIVKPGAMFKKAVIGFNCNVD 76

Query: 386 LFVNATLLLDH-RELIGVPEHFDEITTKEEFLKSFTYFFKHGAAAERFMSNSKLYD 550
           L V+   ++D         +  + + T  +  ++F +FF+ GAAAER+MS+   ++
Sbjct: 77  LIVSGVRVVDALNTTCSEGKDQETLETLADLHQTFAHFFQRGAAAERYMSSEDQFN 132


>Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical
           protein K08F8.4 protein.
          Length = 457

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +2

Query: 305 LSLENENRVKTGNMQPRVALGYGACHDLFVNATLLLDHRELIGVPEHFDEITTKEEFLKS 484
           L L   + V   +++ R +  +  C+++ V      DHR++ GV EHF +   K+  ++ 
Sbjct: 47  LKLFQAHDVNLSHIESRPSKTHEGCYEVLVEFAEAEDHRKIEGVIEHFQQKAEKKVLVQD 106

Query: 485 F 487
           +
Sbjct: 107 W 107


>AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine
           receptor, class i protein54 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 140 HSTFLVNVI--Y-ILAFTMAGFPVKLGTILSFILVFYAIYYRKTDIGDVRLSPVKEH 301
           H TFL+  +  Y ILA ++ GF ++LG  L F +  +A +     IG + +  V++H
Sbjct: 61  HLTFLIQPVPFYPILAGSIMGFGIRLGATLHFGITGFA-FLLTYQIGSMIICFVRKH 116


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 9   HYLPTNLCQFVENSAFLSHINSQIIVNNELTCALGSSKNTNNSYIP 146
           H++P       E SA  S   ++ +VN+E      SS +TNN  +P
Sbjct: 448 HFIPQLPTSQEEPSAITSETYAEEVVNSESKQVATSSDSTNNLELP 493


>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 362 LGYGACHDLFVNATLLLDHRELIGVPEHFDEIT---TKEEFLKSFTYFFKH 505
           LG    HD++ NA    +H++L  +   FD++    TK++ L   TYFFK+
Sbjct: 685 LGKPNIHDIYANACY--EHQQLDPLST-FDQLRDHYTKQQPLNKKTYFFKN 732


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 362 LGYGACHDLFVNATLLLDHRELIGVPEHFDEIT---TKEEFLKSFTYFFKH 505
           LG    HD++ NA    +H++L  +   FD++    TK++ L   TYFFK+
Sbjct: 685 LGKPNIHDIYANACY--EHQQLDPLST-FDQLRDHYTKQQPLNKKTYFFKN 732


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 362 LGYGACHDLFVNATLLLDHRELIGVPEHFDEIT---TKEEFLKSFTYFFKH 505
           LG    HD++ NA    +H++L  +   FD++    TK++ L   TYFFK+
Sbjct: 685 LGKPNIHDIYANACY--EHQQLDPLST-FDQLRDHYTKQQPLNKKTYFFKN 732


>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical protein
            C29E6.2 protein.
          Length = 1193

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 149  FLVNVIYILAFTMAGFPVKLGTILSFILVFYAIYYRKTDIGDVRLSPVKEHLLSL 313
            F+V  + I+      FPV +  I++F   FY I   + +   + +SP+K  ++ +
Sbjct: 944  FVVMFVDIVKTFFRFFPVFVLFIIAFSSSFYVILQNRPEFSTIFMSPLKTTVMMI 998


>Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical
           protein M01F1.1 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 145 HIFSERYLHSRIYHGRFPSEIRYNFVIYFSVLRYLLSKN 261
           HIFS    +S +       +I  +F  YFS  RYLL K+
Sbjct: 181 HIFSNSNNYSSVIITEDDLDIAPDFFSYFSNTRYLLEKD 219


>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient receptor
            potential subfamilyA-1 protein.
          Length = 1206

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 149  FLVNVIYILAFTMAGFPVKLGTILSFILVFYAIYYRKTDIGDVRLSPVKEHLLSL 313
            F+V  + I+      FPV +  I++F   FY I   + +   + +SP+K  ++ +
Sbjct: 957  FVVMFVDIVKTFFRFFPVFVLFIIAFSSSFYVILQNRPEFSTIFMSPLKTTVMMI 1011


>AF082012-1|AAD03024.1|  437|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 145 HIFSERYLHSRIYHGRFPSEIRYNFVIYFSVLRYLLSKN 261
           HIFS    +S +       +I  +F  YFS  RYLL K+
Sbjct: 181 HIFSNSNNYSSVIITEDDLDIAPDFFSYFSNTRYLLEKD 219


>AF016684-16|AAB66213.1|  506|Caenorhabditis elegans Hypothetical
           protein F45C12.16 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 39  VENSAFLSHINSQIIVNNELTCALGSSKNTNNSYIP 146
           ++N  FL+++ S  ++N+E    + S++N   +Y+P
Sbjct: 402 LKNIDFLANLRSMAVLNDEPAIKIVSNQNLKYAYLP 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,680,899
Number of Sequences: 27780
Number of extensions: 262211
Number of successful extensions: 722
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)