Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a05
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.1  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   3.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   3.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 294 RNIYCPWKMRIESKQGICNRALLWATVHAMTSL 392
           R I CP   R+ SKQ     A  W  V   T L
Sbjct: 156 RTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVL 188


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 294 RNIYCPWKMRIESKQGICNRALLWATVHAMTSL 392
           R I CP   R+ SKQ     A  W  V   T L
Sbjct: 156 RTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVL 188


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 134 FIHSTFLVNVIYI 172
           FIHS FL+ +I+I
Sbjct: 9   FIHSIFLILIIFI 21


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 134 FIHSTFLVNVIYI 172
           FIHS FL+ +I+I
Sbjct: 9   FIHSIFLILIIFI 21


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 287 PVKEHLLSLENENRVKTGNMQPRVALGYGACHDLF 391
           P+ +HL  + ++   K GN +    +G     D+F
Sbjct: 505 PLPQHLPRIHHDAEWKVGNHEDGYLIGVNNLIDIF 539


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 287 PVKEHLLSLENENRVKTGNMQPRVALGYGACHDLF 391
           P+ +HL  + ++   K GN +    +G     D+F
Sbjct: 420 PLPQHLPRIHHDAEWKVGNHEDGYLIGVNNLIDIF 454


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 287 PVKEHLLSLENENRVKTGNMQPRVALGYGACHDLF 391
           P+ +HL  + ++   K GN +    +G     D+F
Sbjct: 739 PLPQHLPRIHHDAEWKVGNHEDGYLIGVNNLIDIF 773


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 209 GTILSFILVFYAIYYRKTDIGDVRLSPVKEHLLSLENE 322
           G +L   L    + Y+   +G   +SP   HL++L+ +
Sbjct: 724 GQLLLDYLTDTVLAYKPKILGKPTISPDSRHLVTLDKQ 761


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 529 HEPLGCSAMLEEICKTFEKLLFSCDFVEML 440
           H+   CS M+E +  T + L+F  +  + L
Sbjct: 141 HDTQICSMMIESLSHTTQDLVFIWNMTDPL 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,695
Number of Sequences: 438
Number of extensions: 3182
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)