Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13a04
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 117 2e-27
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 116 3e-27
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 31 0.15
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.20
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 30 0.35
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 30 0.35
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 28 1.1
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 1.9
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 27 1.9
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 2.5
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 27 2.5
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 27 2.5
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 27 2.5
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 27 3.3
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 3.3
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 3.3
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 3.3
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 26 4.4
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 22 7.3
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 7.6
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 7.6
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 7.6
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 117 bits (281), Expect = 2e-27
Identities = 74/168 (44%), Positives = 102/168 (60%), Gaps = 9/168 (5%)
Frame = +1
Query: 202 MATDQAKNRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTD--- 369
M + +R FK+ G DE+RR+R E +E+RK KREE+L KRRN+ D
Sbjct: 1 MESRYLSDRRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDV 60
Query: 370 EEEIDKNLATTDL---DELVMNAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAG 534
EEE D++ + DE A+ +++ E QL AV + RK LS + +PPID++IA G
Sbjct: 61 EEEADQSQVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACG 120
Query: 535 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVF 678
++ VQ L +++ LQFE AWALTNIASGT+ QT VV +GAVP F
Sbjct: 121 VVDRFVQFLE-SEHHLLQFEAAWALTNIASGTTDQTRIVVDSGAVPRF 167
Score = 34.3 bits (75), Expect = 0.016
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +1
Query: 487 LSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGA 666
LS N I ++ G P LV+ LS + + +Q ++ NI +GT AQT ++ GA
Sbjct: 275 LSDGPNEKIGAILDVGCAPRLVELLS-SPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGA 333
Query: 667 VPVF 678
+ F
Sbjct: 334 LNAF 337
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 520 LIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAV 669
++ +G +P +Q LS + + + WAL NIA +SA + V+ G +
Sbjct: 158 VVDSGAVPRFIQLLSSPEKDVRE-QVVWALGNIAGDSSACRDYVLGNGVL 206
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 514 DELIAAGILPILVQCL-SRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPV 675
D ++ G+L L+ L S A + ++ W L+N+ G + N + AVP+
Sbjct: 198 DYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPI 252
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 116 bits (279), Expect = 3e-27
Identities = 71/160 (44%), Positives = 99/160 (61%), Gaps = 7/160 (4%)
Frame = +1
Query: 220 KNRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEID-KNL 393
++R +K G DE+RRRR +E+RK KREE L KRRN+ EE I +
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEETIPLEQD 69
Query: 394 ATTDLD-EL----VMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQC 558
DL+ EL ++ A +++ EAQ+ A + RK LS + NPPI ++I AG++P V+
Sbjct: 70 KENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEF 129
Query: 559 LSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVF 678
LS +N L+FE +WALTN+ASG+S QT+ VV A AVPVF
Sbjct: 130 LSHENN-LLKFEASWALTNVASGSSNQTHVVVEANAVPVF 168
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 31.1 bits (67), Expect = 0.15
Identities = 24/99 (24%), Positives = 42/99 (42%)
Frame = +1
Query: 379 IDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQC 558
+DK L ++ + +N ++ V Q +LS D + + + A GILP+L +
Sbjct: 512 LDKRTHLASLLSSLLGSLRDKNIGSKDTTVSQIASILSEDLSLKREIIQAHGILPLL-ET 570
Query: 559 LSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPV 675
L P +Q + +A KV AG +P+
Sbjct: 571 LREIKTPDVQLLLLKLINTVAFDDHTTLQKVCFAGGLPL 609
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.20
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = -3
Query: 539 SIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 366
SIP + SS ++ SS + ++++ S FS++++ ++SS+ S + LSISSSS
Sbjct: 544 SIPTSSSSDFSSSITTISSGI---SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSS 598
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.9 bits (64), Expect = 0.35
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 265 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL-VMNAANAE 441
E++ R ++ E K ++ + Q+RR + S E DKN++ DLDE +++ A
Sbjct: 51 ELKIRVAQLERERAKLEQSLSFQQRRAEMLEKSLRELRKDKNISVKDLDEFHLLDKPAAN 110
Query: 442 NPEAQLAA 465
N +A A
Sbjct: 111 NTKADAEA 118
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 29.9 bits (64), Expect = 0.35
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Frame = +1
Query: 184 TASTDKMATDQ--AKNRMHVFKN-AGKDVDE---MRRR---RNEVTVELRKNKREETLQK 336
TAS ++ D +NR +N +G V+E + R+ R + ++ ++N+ T+QK
Sbjct: 261 TASLEEYLNDPDFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTIQK 320
Query: 337 RRNVPISYSTDEEEIDKNLATT 402
V S+ EEE K+L T
Sbjct: 321 ENTVQQEASSSEEEAVKSLPET 342
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = -3
Query: 539 SIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 366
S P + SS+I S SSF ++++ +S S+ ++ TSSS ++ + S SSSS
Sbjct: 298 SSPTSTSSTISSSSSSSSSFSSTLSSSSMSSS-SSFSSSPTSSSSTISSSSSSPSSSS 354
Score = 26.2 bits (55), Expect = 4.4
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = -3
Query: 611 VKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSAL 432
V + + S ++ S L SIP+ SSS S SS + A+ +S S++
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSS--SSSSTASSSSSSSSI 272
Query: 431 AAFITSSSRSVVARFLSISSSS 366
+ +SSS S + +ISSSS
Sbjct: 273 ISSSSSSSSSPTSTSSTISSSS 294
Score = 25.8 bits (54), Expect = 5.8
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -3
Query: 605 AQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAA 426
+ VS+ ++ S+ + S PA+ SS SH+SS ++A +S F +
Sbjct: 369 SSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNST 428
Query: 425 FITSSSRSVVARFLSISSSSV 363
SSS S S+SS +
Sbjct: 429 SSRSSSHSSSHSLSSLSSKPI 449
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -3
Query: 539 SIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 366
S P + SS+I S SS T ++ S S+ ++ ++SSS + + S SSSS
Sbjct: 334 SSPTSSSSTISSSSSSPSSSSFSSTTSSSKSS-SSFSSTVSSSSSTSSSTLTSSSSSS 390
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 249 CILEHMHAVFRLISRHFICARCLDTVRGNYTKKQRINIKLLSSK 118
C+ E +FRL +C C + NY++ Q N L SK
Sbjct: 93 CLKEAPGFIFRLQGSIKVCRPCASILVNNYSRSQLFNHSLNESK 136
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 217 AKNRMHVFKNAGKDVDEMRR--RRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 378
A M V +G DVD ++E T+E K K E Q+R+ + T ++E
Sbjct: 447 ANGEMEVTFTSGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELRQLKKTKDDE 502
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +1
Query: 220 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 342
++R+ ++ K++DE RR++ E+ +E ++ E+ L+K R
Sbjct: 294 ESRLQKMQDNAKELDESRRKKIEL-LEKKERDEEQFLEKER 333
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 676 IQVLHRHGLLCLFVQTFRKLCLLKPKRSRIVTLDCQPSKGTE 551
+Q L+RHGL+ + + + + LK K + ++ + Q G E
Sbjct: 1667 VQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKE 1708
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +1
Query: 139 VDSLFLCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRK-NK 315
V SLF + ++ ++ TD + + ++A +DE+R+ +E ++++ +K
Sbjct: 430 VKSLFKTYVDVVHIKKQDKRRLGTDPSTLESDIAEDAALQIDEVRKISDEEVEKIQQVSK 489
Query: 316 REE--TLQKRRNVPISYSTDE 372
R++ + R P Y D+
Sbjct: 490 RDDIYDILSRSLAPSIYEMDD 510
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 143 ILCFFV*LPRT-VSRQRAQ-IKWRLIKRKTACM 235
IL F+ +PRT + + R + + WR+I R AC+
Sbjct: 400 ILASFLPIPRTKIHQMRVKHVHWRIINRVVACL 432
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 27.1 bits (57), Expect = 2.5
Identities = 23/129 (17%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Frame = +1
Query: 181 ETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY 360
+TAS++K + + ++ + F N K + + ++N+ + R + +S
Sbjct: 102 QTASSNKTFSKRKRSSENSFNNRNKAKSSETSDSSNTSQSFKENRALKDTATSRPLALSS 161
Query: 361 STDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLS--CDKNPPIDELIAAG 534
T ++ +K A ++ + + N++ ++ ++ K +S + ++ IA G
Sbjct: 162 DTSYQKSEK--AKSEKSPFLSTSKNSDANYSKTTNQKEAEKAVSQLFEVGVRFNDFIAEG 219
Query: 535 ILPILVQCL 561
I P +V L
Sbjct: 220 IEPSVVHTL 228
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +1
Query: 190 STDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQ--KRRNVPISYS 363
ST+ D + N+ K VD ++ + T ++ + Q K+++ ++ S
Sbjct: 9 STEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNES 68
Query: 364 TDEEEIDKNLATTDLDELVMNAANAENPE 450
DE+ + ++ DEL + AEN E
Sbjct: 69 EDEDFAGFGESASENDELESAESEAENDE 97
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +1
Query: 265 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDE 414
E++R++++ E K KR++ L+ + + DE++ ++ D D+
Sbjct: 5 ELKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQ 54
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +1
Query: 214 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPIS 357
Q K F G +++ ++ + ELRK K+E +++ + +S
Sbjct: 996 QEKEEGDTFDAFGNKIEKAKKAKKLTGAELRKKKKERMARRKAGLEVS 1043
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 441 FCVGSVHHQLIKVGGSEVLVDLLLI 367
+C G H ++ +GGS V +DL+ I
Sbjct: 263 YCTGDGHKMVMSIGGSTVDLDLVQI 287
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 4.4
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Frame = +1
Query: 274 RRRNEVTVELRKNKREETLQKRRNVPISYSTDEE-------EIDKNLATTDLDELVMNAA 432
R+R++ ++KN R+++ Q++RN+ ++EE EID + + +
Sbjct: 113 RKRSDKLKTMKKN-RKQSFQRKRNILEDGKSEEEKFPMKCDEIDPYSRQAIVIRYISDEV 171
Query: 433 NAENPEA-QLAAVQQCRKLLSCDK--NPPIDELIAAGIL 540
EN Q+ + Q KL+ K P +D + GI+
Sbjct: 172 AKENIGGNQVYLIHQLLKLVRAPKFEAPEVDNYVVMGIV 210
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 21.8 bits (44), Expect(2) = 7.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 319 EETLQKRRNVPISYSTDEEEIDKNLATTDLD 411
E+T+ + + I YST + ++ A DL+
Sbjct: 94 EKTINNNQELRIKYSTSPQRFIESEADLDLE 124
Score = 21.8 bits (44), Expect(2) = 7.3
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +1
Query: 433 NAENPEAQLAAVQQCRKLLSCDKNPP-----IDELIAAGILPILVQCLSRAD 573
N EN + + ++ +L D +P LI +G+LP+L + R D
Sbjct: 155 NHENADITITVLELLIELTDEDVDPDALNSLFTSLIDSGLLPLLSNTIKRFD 206
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +1
Query: 232 HVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 348
HV + K +E R+R+ E+ E+R+++ +E +K++ +
Sbjct: 352 HVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKL 390
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 292 TVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 393
T+E KN +T + ++ +SY D + +DK +
Sbjct: 137 TLETEKNLNSKTSESLKSPTLSYPFDLDSLDKRI 170
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 358 YSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDEL 522
+S+DEEE+D T+ +E N A E + +Q + + +K P DE+
Sbjct: 146 FSSDEEEMDDISVTSSEEEEEENGARIEELNSDEEDAEQAEEEI-LEKPVPKDEV 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,864
Number of Sequences: 5004
Number of extensions: 60210
Number of successful extensions: 272
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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