Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a04
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    27   0.16 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.2  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 262 DEMRRRRNEVT-VELRKNKREETLQKRRNVPISYSTDEEEIDK 387
           ++ ++ RNE   ++LR   +EE LQ RR   +     E+E +K
Sbjct: 13  EKFKQLRNEDNKIDLRSRTKEERLQYRREAWLVQQEREQEYEK 55


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 90  TSDGGLTSIFTKYSTTHKG*SVSFRNLFI 4
           + DGG  S+  K  TTH G S+   NL I
Sbjct: 442 SDDGGPLSLKNKVETTHSGTSLFRINLGI 470


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 520 LIAAGILPILVQCLSRADNPALQFETAWALTNIA 621
           +   G +  ++ C+    NP++Q  T + L N+A
Sbjct: 43  IFVTGFVGNIITCIVIWRNPSMQTPTNYYLFNLA 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,367
Number of Sequences: 438
Number of extensions: 3972
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)