Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a03
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...   114   1e-26
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...   113   2e-26
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   4.7  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   8.3  

>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score =  114 bits (274), Expect = 1e-26
 Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
 Frame = +2

Query: 143 FLIKHPLQNQWSLWFY-DNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDY 319
           F +KHPL   W+LWF         W E    + TF++VE+FW ++++I   S L    DY
Sbjct: 34  FNLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDY 93

Query: 320 AVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEICG 496
           + F++G+RP WED  NK GG+W     K +    LD  WL  VL  IGE  +    E+ G
Sbjct: 94  SFFREGVRPEWEDVHNKTGGKWAFQ-NKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMG 152

Query: 497 AVVNVRPKVDKIAIWTADAMKQHATIEIGKK 589
            V+N+R    ++A+WT     +   +EIG +
Sbjct: 153 VVINMRKGFYRLAVWTKSCNNREVLMEIGTR 183


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score =  113 bits (272), Expect = 2e-26
 Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
 Frame = +2

Query: 122 NAEVPPEFLIKHPLQNQWSLWFYDND-RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 298
           NAE    F+  HPLQ++W+LWF     +   W + L E+ +F TVE+FW ++  I   S 
Sbjct: 55  NAETA--FVKTHPLQHEWTLWFLKPPTQGLEWSDLLKEIISFKTVEEFWGIFKTISKASM 112

Query: 299 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE- 475
           L    DY+ F +GIRP WED  N  GG+W  + + K + ++LD  WL +VL  IGE  + 
Sbjct: 113 LPAKSDYSYFLKGIRPEWEDPQNMNGGKW--AYQSKHKGSNLDELWLYMVLAAIGETLDP 170

Query: 476 NSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIG 583
              E+ G V N+R    +IA+WT +   +    +IG
Sbjct: 171 TGKEVTGVVCNMRKGFYRIAVWTRNCNDKDVLEKIG 206


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 27/99 (27%), Positives = 46/99 (46%)
 Frame = -2

Query: 501  TAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMPCLNT 322
            T+P +S    + S I   +TSN N+  S    F S + +        +S+ I +   LN+
Sbjct: 3801 TSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNS----FTTASTSIMKTTSLNS 3856

Query: 321  A*S*PWRSSDGSLI*WYNLQKSSTVSNVVNSIRFSSHVL 205
              S  W +S    + +YN   SSTV    ++ R +S+ +
Sbjct: 3857 N-SYKWYNSTTQSV-YYN-ATSSTVPWSNSTFRNTSNTM 3892


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 143 FLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTF 244
           F I+  L+   +  FY N +NK W  N  +L TF
Sbjct: 511 FEIESSLRLSSNKVFYHNPKNKKWLINTSDLITF 544


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 150 SSTRYKTSGVSGFTTMTETKHG 215
           ++T Y TSG  GFTT   T+ G
Sbjct: 647 TTTEYTTSGSVGFTTTLATQSG 668


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 338 IRPMWEDDANKMGGRWLIS-LEKKQRFTDLDRFWLDVV 448
           +  +WE   N   G +L   +EKK  F  +DR+W  V+
Sbjct: 161 VAALWEQ-FNIFHGSYLFDEIEKKSSFEIIDRWWTSVL 197


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 384 HLPPILLASSSHIGRMPCLNT 322
           H+PP LLA+SS   R+P ++T
Sbjct: 140 HMPPNLLAASSARLRLPPIST 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,219
Number of Sequences: 5004
Number of extensions: 49167
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)