Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13a03
(592 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 193 7e-50
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 190 8e-49
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 189 1e-48
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 141 3e-34
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 141 4e-34
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 134 6e-32
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 134 6e-32
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 134 6e-32
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 92 2e-19
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 92 2e-19
AF045642-12|AAD34648.1| 348|Caenorhabditis elegans Hypothetical... 29 3.3
Z71267-5|CAJ80828.1| 266|Caenorhabditis elegans Hypothetical pr... 28 5.7
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 28 5.7
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p... 27 7.5
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein. 27 7.5
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 27 7.5
Z50872-8|CAA90758.1| 865|Caenorhabditis elegans Hypothetical pr... 27 10.0
AL031269-3|CAA20334.1| 865|Caenorhabditis elegans Hypothetical ... 27 10.0
AF016443-2|AAC24272.1| 359|Caenorhabditis elegans Hypothetical ... 27 10.0
AB055111-1|BAB62292.1| 865|Caenorhabditis elegans VHA-6 protein. 27 10.0
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 193 bits (471), Expect = 7e-50
Identities = 83/159 (52%), Positives = 114/159 (71%), Gaps = 1/159 (0%)
Frame = +2
Query: 119 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 298
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGG 79
Query: 299 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-E 475
L G DY +FK+GI+PMWED N GGRWL+ ++K++R LD +WL++++ ++GE F E
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFDE 139
Query: 476 NSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKL 592
D ICGAVVNVR K DK+++WT DA + + IG+ L
Sbjct: 140 YGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVL 178
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 190 bits (462), Expect = 8e-49
Identities = 85/161 (52%), Positives = 115/161 (71%), Gaps = 3/161 (1%)
Frame = +2
Query: 119 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 298
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGG 79
Query: 299 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK-QRFTD-LDRFWLDVVLLLIGENF 472
L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR T LD +WL++++ ++GE F
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQLQRRTQLLDHYWLELLMAIVGEQF 139
Query: 473 -ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKL 592
E D ICGAVVNVR K DK+++WT DA + + IG+ L
Sbjct: 140 DEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVL 180
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 189 bits (460), Expect = 1e-48
Identities = 85/162 (52%), Positives = 115/162 (70%), Gaps = 4/162 (2%)
Frame = +2
Query: 119 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 298
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGG 79
Query: 299 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK--QRFTD-LDRFWLDVVLLLIGEN 469
L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR T LD +WL++++ ++GE
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQKLQRRTQLLDHYWLELLMAIVGEQ 139
Query: 470 F-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKL 592
F E D ICGAVVNVR K DK+++WT DA + + IG+ L
Sbjct: 140 FDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVL 181
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 141 bits (342), Expect = 3e-34
Identities = 63/149 (42%), Positives = 94/149 (63%), Gaps = 4/149 (2%)
Frame = +2
Query: 149 IKHP---LQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDY 319
I HP L+ W+ W+ +++RNK+WEE L + TF +V +FW L+ IK PS L DY
Sbjct: 12 ISHPVYKLKRNWTWWYLNDERNKSWEERLKNVKTFSSVGEFWALHDSIKPPSGLNPPSDY 71
Query: 320 AVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICG 496
VF+ GI PMWE N+ GGRWLI++EK + +D W ++++ +IGE F ++ + +CG
Sbjct: 72 NVFRDGIEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCG 131
Query: 497 AVVNVRPKVDKIAIWTADAMKQHATIEIG 583
V NVR K KI++WT ++ A + IG
Sbjct: 132 IVCNVRGKGSKISVWTTNSADDGANLRIG 160
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 141 bits (341), Expect = 4e-34
Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Frame = +2
Query: 155 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 334
+PL+ W+ W+ +++RNK+WE+ L ++ TF+TV +FW LY I+ PS L DY VF+
Sbjct: 12 YPLKRNWTWWYLNDERNKSWEDRLKKVYTFNTVSEFWALYDAIRPPSGLNALCDYNVFRD 71
Query: 335 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNV 511
I+PMWE N GGRWLI ++K + +D WL++++ L+GE F ++ + ICG V NV
Sbjct: 72 DIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNV 131
Query: 512 RPKVDKIAIWTADAMKQHATIEIG 583
R K KI++WT D + IG
Sbjct: 132 RGKGSKISVWTKDCNDDETNMRIG 155
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 134 bits (323), Expect = 6e-32
Identities = 62/144 (43%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Frame = +2
Query: 155 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 334
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+
Sbjct: 9 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 68
Query: 335 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNV 511
I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + ICG V NV
Sbjct: 69 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 128
Query: 512 RPKVDKIAIWTADAMKQHATIEIG 583
R + KI++WT + + IG
Sbjct: 129 RGQGSKISVWTKNCNDDDTNMRIG 152
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 134 bits (323), Expect = 6e-32
Identities = 62/144 (43%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Frame = +2
Query: 155 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 334
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+
Sbjct: 48 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 107
Query: 335 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNV 511
I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + ICG V NV
Sbjct: 108 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 167
Query: 512 RPKVDKIAIWTADAMKQHATIEIG 583
R + KI++WT + + IG
Sbjct: 168 RGQGSKISVWTKNCNDDDTNMRIG 191
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 134 bits (323), Expect = 6e-32
Identities = 62/144 (43%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Frame = +2
Query: 155 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 334
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+
Sbjct: 9 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 68
Query: 335 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNV 511
I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + ICG V NV
Sbjct: 69 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 128
Query: 512 RPKVDKIAIWTADAMKQHATIEIG 583
R + KI++WT + + IG
Sbjct: 129 RGQGSKISVWTKNCNDDDTNMRIG 152
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 92.3 bits (219), Expect = 2e-19
Identities = 44/115 (38%), Positives = 67/115 (58%)
Frame = +2
Query: 248 TVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLD 427
+VE FW + H K P+E+ D FK G++P+WED AN GG+W+I L+K
Sbjct: 66 SVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----T 121
Query: 428 RFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKL 592
R W ++++ +IGE F DE+CGAV ++R + D I++W +A T I + L
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETL 176
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 92.3 bits (219), Expect = 2e-19
Identities = 44/115 (38%), Positives = 67/115 (58%)
Frame = +2
Query: 248 TVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLD 427
+VE FW + H K P+E+ D FK G++P+WED AN GG+W+I L+K
Sbjct: 66 SVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----T 121
Query: 428 RFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKL 592
R W ++++ +IGE F DE+CGAV ++R + D I++W +A T I + L
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETL 176
>AF045642-12|AAD34648.1| 348|Caenorhabditis elegans Hypothetical
protein C17H12.8 protein.
Length = 348
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 513 LTLTTAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIG 343
LT T S++F F TT Q ++KSV R++ H +L + +H+G
Sbjct: 84 LTRTIVSSRSAKFVHFYIFPNTTTKFQVITKSVNMHSSFRIVVHFERMLNTTVTHLG 140
>Z71267-5|CAJ80828.1| 266|Caenorhabditis elegans Hypothetical
protein W01A8.7 protein.
Length = 266
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 302 RQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVV 448
+ GH Y K+ + WE + N G+W+ K++ +D+FW++V+
Sbjct: 227 KAGH-YQHLKKILYKKWESENN---GKWI-----KRKSNQVDKFWIEVI 266
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -2
Query: 492 QISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSH 349
++ E K +KR + K C F + +S +L++SS H
Sbjct: 1345 RLEVEVKKNKGVKRSVVKKELTFADYKNCLFDKTVSRKQQMLISSSKH 1392
>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
protein F43G9.6 protein.
Length = 2034
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 170 QWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHD-YAVFKQGIRP 346
QW +R + L F + + H++ P+++R+ + Y V +G+
Sbjct: 693 QWPTLVDQRNRKREHVAVLHAKMWFGRTDQLTKWKEHVQ-PADIRRFMEMYEVQTKGLAL 751
Query: 347 MWEDDANKMGGRW 385
W+D+A+ G+W
Sbjct: 752 KWKDEADIYDGKW 764
>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
Length = 2034
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 170 QWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHD-YAVFKQGIRP 346
QW +R + L F + + H++ P+++R+ + Y V +G+
Sbjct: 693 QWPTLVDQRNRKREHVAVLHAKMWFGRTDQLTKWKEHVQ-PADIRRFMEMYEVQTKGLAL 751
Query: 347 MWEDDANKMGGRW 385
W+D+A+ G+W
Sbjct: 752 KWKDEADIYDGKW 764
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 492 QISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMP 334
Q S S S + ++T + SKS +RC+F L L+ SSS R P
Sbjct: 4 QASQRSSSTSAVAQKTRERRK-SKSRRRCWFGCLWLSSRVSLIRSSSRFSRSP 55
>Z50872-8|CAA90758.1| 865|Caenorhabditis elegans Hypothetical
protein VW02B12L.1 protein.
Length = 865
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 281 IKLPSELRQGHDYAVFKQGIRPMWEDDANKM 373
+ P E+ HDY + G+ P+W N++
Sbjct: 515 LTFPPEIAFNHDYGPYPFGVDPVWNLAINRL 545
>AL031269-3|CAA20334.1| 865|Caenorhabditis elegans Hypothetical
protein VW02B12L.1 protein.
Length = 865
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 281 IKLPSELRQGHDYAVFKQGIRPMWEDDANKM 373
+ P E+ HDY + G+ P+W N++
Sbjct: 515 LTFPPEIAFNHDYGPYPFGVDPVWNLAINRL 545
>AF016443-2|AAC24272.1| 359|Caenorhabditis elegans Hypothetical
protein C17E7.6 protein.
Length = 359
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 403 FLKTDKPSSSHLVSIVFPHRTNALLEYCIVM 311
F D P++ +VS + T+AL +YC++M
Sbjct: 279 FYDQDNPNAQQIVSAQQQNFTSALSQYCLLM 309
>AB055111-1|BAB62292.1| 865|Caenorhabditis elegans VHA-6 protein.
Length = 865
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 281 IKLPSELRQGHDYAVFKQGIRPMWEDDANKM 373
+ P E+ HDY + G+ P+W N++
Sbjct: 515 LTFPPEIAFNHDYGPYPFGVDPVWNLAINRL 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,040
Number of Sequences: 27780
Number of extensions: 274242
Number of successful extensions: 709
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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