Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a02
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.76 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   1.3  
SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch...    26   4.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   5.3  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   7.1  

>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +2

Query: 341 KYALPNLPTPQHVLEDASDSEILNLTYSFKLQTDDEALQNAYSCFQNCKQLEADSVKQND 520
           K+ LP  PT   +  +  +  +   + S    T DEA+      FQ     E + V  ND
Sbjct: 456 KFQLPPRPTSNTLPLEPEEELVTRYSVSSDGNTVDEAITKQSQTFQLVNSNEFNEVNAND 515

Query: 521 LNIKLQELNKKL 556
           ++  L++   KL
Sbjct: 516 VHKSLRQNCAKL 527


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 449  ALQNAYSCFQNCKQLEADSVKQNDLNIKLQELNKKL 556
            A  N YSCF +   LE   +KQ + N +  ++ K +
Sbjct: 1386 AAMNMYSCFLDLFLLEVSDLKQTECNAQSDKIIKSI 1421


>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
           Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 476 QNCKQLEADSVKQNDLNIKLQELNK 550
           ++CKQ  A+ +K+ DLN KL  L++
Sbjct: 54  KSCKQEYANLIKERDLNKKLDMLDE 78


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
 Frame = +2

Query: 332 KMDKYALPNLPTPQHVLEDASDSEILNLTYSFKLQTDDEALQNAYS-----CFQNCKQLE 496
           K+D    P LP P H        E L  +  F  +     +  AYS      F+ C  L 
Sbjct: 278 KLDYAPAPKLPPPSHEESYNPPEEYLKQSSDFPKKYKSLRVVPAYSNLIKEKFERCLDLY 337

Query: 497 -ADSVKQNDLNIKLQELNKKL 556
            A  V++  LNI  + L  KL
Sbjct: 338 LAPRVRRTKLNIDPESLLPKL 358


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 2   LYIWTKIFY*YVNTDLF 52
           LY W KIF  Y+++D+F
Sbjct: 216 LYCWRKIFEIYMDSDIF 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,599
Number of Sequences: 5004
Number of extensions: 47111
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)