Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a01
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   1.0  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    27   1.3  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   1.8  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   4.1  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   4.1  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    25   4.1  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   5.4  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   5.4  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   7.1  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    24   9.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   9.4  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    24   9.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   9.4  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 322 HPSDTIGLVSINRDVQPTDFISPVALSASEDLPES 426
           HP+ T G VS N +  P   +  V      +LP S
Sbjct: 669 HPTGTFGNVSGNYNTSPAQSVGDVTAEEGSELPSS 703


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 219 AEDPARVNEGTGAGVEQTTGRNSDA*MDLVGLVSEGNQGVGT 94
           +ED    N+      E  T   SD  +D  G  +EG  G GT
Sbjct: 69  SEDSDAANQSPSGAPESQTEEESDRKIDGTGSSAEGGDGSGT 110


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 286 PSLVTETSAVRLHPSDTIGLVSI----NRDVQPTDFISPVALSASED 414
           P L + TS +RL PSDT   + +    N ++    + +P+  S S D
Sbjct: 97  PILNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILESTSSD 143


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 64  LVQGRSTGVQSTNALVALGDKPYQVHLRIAVSTSG 168
           L  G +T V  T       DKP  V  +IAV TSG
Sbjct: 169 LESGLATPVVETLKKATTSDKPAGVKKKIAVMTSG 203


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 37  SFVLLCGLALVQGRSTGVQSTNALVALGDKPYQV 138
           +++ +CG  +   R TG+ + N +V+ G + Y V
Sbjct: 818 NYLTICGAVIGWTRGTGLMAPNNIVSQGIEKYGV 851


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 IAVSTSGLLNTCAGSLIHSRWVLSAASCLQDVRFIW 255
           +A+S+  +L T A      +W +    C+Q + F+W
Sbjct: 441 LALSSDDVLITGADDKTVRQWDIVTGRCIQTLDFVW 476


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 80  APVCKVPTPWLPSETSPTRSIYASLFRPVVCSTP 181
           +P+   P   +PS  SPT +I+++    +   TP
Sbjct: 688 SPIRASPVKTIPSSPSPTTNIFSAPLNNITNCTP 721


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 249 ETDILEAASGAEDPARVNEGTGAGVEQTTGRNSDA*MDLVG 127
           E ++ ++A+G  DP  ++  T   V QTT    DA  ++ G
Sbjct: 241 EFEVTDSAAGTVDPTILDNATAGQVGQTTW-EGDAEWNITG 280


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 111 NQGVGTLHTGAAPLY 67
           N+G GTL+ G APL+
Sbjct: 169 NEGFGTLYRGLAPLW 183


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 345 ETNGIRGVQTDCASLRDQGRVNYHHQTITDPDETDILEAASGAEDPA 205
           ETN     ++    LR +G   YHH  ++ P       A++   D A
Sbjct: 25  ETNAATSPRSFQIQLRIKGYAVYHHGFLSSPSHKHPTTASASDSDEA 71


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 320 CTPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAA 442
           CT    + +  S+ +S P+T ++P     + + P P  S +
Sbjct: 229 CTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTS 269


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 213 DPARVNEGTGAGV 175
           DP+++N+GTG GV
Sbjct: 412 DPSKMNQGTGDGV 424


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 119  PRATRALVLCTPVLRPCTRARPHNSTKDRTF 27
            P+    + L TP +   TRA  H + K+ TF
Sbjct: 1623 PQKASKVNLLTPTISNGTRASKHANEKENTF 1653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,831
Number of Sequences: 5004
Number of extensions: 44737
Number of successful extensions: 150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)