Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13a01
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              25   0.50 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   0.67 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   0.88 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   0.88 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   0.88 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   0.88 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   3.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   4.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.2  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   8.2  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = +1

Query: 241 VRFIWVRYGLVVVINPSLVTETSAVRLHPSDTIGLVSINRDVQPTDFISPVALSASEDLP 420
           ++ I V +   + +N   + E   ++LH    I       D Q  D I+ V     ++ P
Sbjct: 1   MKTIVVIFAFCICVNAMTIEELK-IQLHDVQEICKTESGIDQQTVDDINEVNFDVEDEKP 59

Query: 421 ESGNVC 438
           +  N C
Sbjct: 60  QRYNEC 65


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 107 WLPSETSPTRSIYASLFR 160
           W   ++ P RSIY+SL R
Sbjct: 370 WSSQKSEPRRSIYSSLLR 387


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 245 RTSWRQLAALRTQRE*MREPAQVLS 171
           R +W++ +  RT+RE  REP  + S
Sbjct: 60  RETWKERSRDRTERERSREPKIISS 84


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 245 RTSWRQLAALRTQRE*MREPAQVLS 171
           R +W++ +  RT+RE  REP  + S
Sbjct: 60  RETWKERSRDRTERERSREPKIISS 84


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 245 RTSWRQLAALRTQRE*MREPAQVLS 171
           R +W++ +  RT+RE  REP  + S
Sbjct: 60  RETWKERSRDRTERERSREPKIISS 84


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 245 RTSWRQLAALRTQRE*MREPAQVLS 171
           R +W++ +  RT+RE  REP  + S
Sbjct: 60  RETWKERSRDRTERERSREPKIISS 84


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 207  ARVNEGTGAGVEQTTGRNSDA 145
            AR  EG GAG+ +T+   S++
Sbjct: 1236 AREREGVGAGIAETSAGTSNS 1256


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 317 VCTPRIPLVSSASTGMSNPLTS 382
           VC+P + + +S + G   PLT+
Sbjct: 35  VCSPDLSVFTSPACGSETPLTN 56


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 10  GLSRKMKVLSFVLLCGLALVQGRSTGV 90
           G     ++L+ V+  G+A+V G  TG+
Sbjct: 395 GQQAAYQLLALVITLGIAIVSGLITGL 421


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 445 QSRRHFRIRVGPRWQTKPRER*SQWVGHPC 356
           Q ++H+   V    QT+  ++ SQ  G PC
Sbjct: 23  QHQQHYGAAVQVPQQTQSVQQQSQQAGDPC 52


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 41  LYYCAVLLWYRGAAPVCKVPTPWLPSETS-PTRSIYASLFRPVVCSTPAPVPSFTLAG 211
           LY  A     R AAP    PT W P++      +I +        ST   +P+ TL G
Sbjct: 498 LYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYG 555


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -2

Query: 219 AEDPARVNEGTGAGVEQTTGRNSDA*MDLVGLVSEGNQGVGTLHTG 82
           A DP   N  T   VE      ++   D +   +EG   V ++H G
Sbjct: 128 ATDPGEHNGDTVTDVEAGLASRTNPLDDSISQANEGFCAVISMHDG 173


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -2

Query: 219 AEDPARVNEGTGAGVEQTTGRNSDA*MDLVGLVSEGNQGVGTLHTG 82
           A DP   N  T   VE      ++   D +   +EG   V ++H G
Sbjct: 123 ATDPGEHNGDTVTDVEAGLASRTNPLDDSISQANEGFCAVISMHDG 168


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 357 VDADETNGIRGVQTD 313
           +D DE NG+    TD
Sbjct: 115 IDGDEENGLTSESTD 129


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 357 VDADETNGIRGVQTD 313
           +D DE NG+    TD
Sbjct: 86  IDGDEENGLTSESTD 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,704
Number of Sequences: 438
Number of extensions: 3531
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)