Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12p13
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    29   0.041
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.2  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   4.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 470 HRLLRRGPRHSPSTPHHKRTQEPSPHGSPHRTYWPTQHS 586
           H  +  G  H  +TPHH  +   +PH   H+   P  HS
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHAATPH---HQHSTPLAHS 451


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 518 HKRTQEPSPHGSPHRTYWPTQHSW 589
           HK   +P+ +G     Y P++H W
Sbjct: 80  HKFQWDPAEYGGVTELYVPSEHIW 103


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 564 HTGPLSILGNFNHMFDAKTRHDAXKLY 644
           +  PLS   N+N+ ++   +H+  KLY
Sbjct: 84  NNNPLSNNYNYNNNYNNYNKHNYNKLY 110


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 610 SNMWLKLPRMLSGPVC 563
           ++MWL +  M+SG  C
Sbjct: 351 TDMWLTMLSMISGATC 366


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 610 SNMWLKLPRMLSGPVC 563
           ++MWL +  M+SG  C
Sbjct: 319 TDMWLTMLSMISGATC 334


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 553 PTPNILAHSAFLAT 594
           PTPN+L + A +AT
Sbjct: 828 PTPNLLRYFASIAT 841


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,081
Number of Sequences: 438
Number of extensions: 4179
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)