Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12p12
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 502  CIDSLIGFRKILKTTQKSLPLKMNTSKDDSASEL 603
            C++ +    KIL+T QK++ L M   + D + E+
Sbjct: 1310 CVEDMKRGNKILRTCQKAVVLSMLLDEVDISMEV 1343


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 74  EVASSKRSSIKWFELQLTYFSTSKQQVCRFKKEIKLRSP 190
           E    KR  I  +EL + Y  T ++++   + + K +SP
Sbjct: 52  EYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKSP 90


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 450 IISRVQRCRHFVAK*-LTVHRLFDWLPKNSKDHSEVITI 563
           +++      H ++K  L      +WLP+   DH + I I
Sbjct: 18  LLTNADNSVHILSKYQLITSTTLNWLPRTHYDHLKEIVI 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 117  YNLRIFRHRNNRFAVS 164
            Y+LR+  H N  FAV+
Sbjct: 1530 YHLRVTAHNNAGFAVA 1545


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 473  ASLHSANNIL*SNEFPLCATKHIGFGSS 390
            A+ H    +L  N + L  T H   GSS
Sbjct: 1457 ATSHELKGLLCGNTYQLYLTSHNKIGSS 1484


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 473  ASLHSANNIL*SNEFPLCATKHIGFGSS 390
            A+ H    +L  N + L  T H   GSS
Sbjct: 1453 ATSHELKGLLCGNTYQLYLTSHNKIGSS 1480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,682
Number of Sequences: 438
Number of extensions: 3484
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)