Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12o08
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    30   1.4  
Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog...    29   3.1  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    28   5.5  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    28   7.2  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    28   7.2  

>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 268 protein.
          Length = 881

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 26/112 (23%), Positives = 44/112 (39%)
 Frame = -2

Query: 532  TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 353
            T P V   P+S   +  +       SA    + +    K     +K  +S SA P+   T
Sbjct: 768  TVPKVTVVPVSRVPVAPSTPLSRRMSAPVVRKPTMTAEKKREITMKPSVSTSARPSLINT 827

Query: 352  LGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEPA*P 197
                  + S +P      K + L+ +  T + +   +  S  P GL++PA P
Sbjct: 828  SSHPMVR-SPLPKMSVLEKPKPLRITRPTVIPQSPTVTSSARPSGLRQPAKP 878


>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -2

Query: 532 TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 353
           ++P+V      LT   SAR +   AS       +P   +++R       S +  P    T
Sbjct: 153 STPVVRNILQQLTTPRSARTSTRAASGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQVT 212

Query: 352 LGTARTKLSRVP 317
            GT+    SR+P
Sbjct: 213 PGTSSNHRSRLP 224


>Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical
           protein F10B5.4 protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 213 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 317
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog
           protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 213 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 317
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/88 (21%), Positives = 38/88 (43%)
 Frame = -2

Query: 481 ARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LTR 302
           A + E  +S +   ++   EAK  +   K  + PSA  +D  +  T  T +++ P   T+
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEPP--TQ 746

Query: 301 RKCRELKSSALTSVTRPEKLMMSDAPGG 218
                  ++A  +  +P +   + A  G
Sbjct: 747 SASASGAAAAAAASAQPSESSSATAASG 774


>Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 617 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 474
           Q +RD   EV+D    F  EE+D EV  D    +   +  D D   EG
Sbjct: 28  QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73


>Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 617 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 474
           Q +RD   EV+D    F  EE+D EV  D    +   +  D D   EG
Sbjct: 28  QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = -2

Query: 544 RLDLTSPIVIAAPMSLTMM-LSARETEAVASATTFSRASP-----PEAKDLRTRLKMRIS 383
           RLD T P+  A P+ L ++ ++ +E +  AS T+   A P     P A       +  + 
Sbjct: 59  RLDNTIPVPPALPIGLPIIQITTKEPQPPASLTSLPAAPPSAQVAPPAIRPPEAKRTSLE 118

Query: 382 PSAEPTDAETLGTARTKLSRVPT 314
           P    T   ++ +  T L R PT
Sbjct: 119 PPQPSTPQASISSTTTVLIRNPT 141


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 427 PEAKDLRTRLKMRISPSAEPTDAETLGT 344
           P + D + R+K+ +SP+A P DAE  GT
Sbjct: 491 PRSTDEKIRVKL-VSPAATPYDAEKAGT 517


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 54   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 197
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 54   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 197
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,950,956
Number of Sequences: 27780
Number of extensions: 272320
Number of successful extensions: 864
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)