Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12n09
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          25   0.63 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.4  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    24   1.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   5.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.7  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 188 LICKSLNALRARQPSSLASL*YISRLSLDVLPIF 87
           L+ + + AL  R    LAS  +I  LSL + P+F
Sbjct: 2   LVARPMQALSIRHAVILASFVWIYALSLSLPPLF 35


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 482 ISCKPVTSGAPSHTTKSA 429
           I+C+ VTS A +H  KSA
Sbjct: 13  IACQDVTSAAVNHQRKSA 30


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
           protein MRJP3 protein.
          Length = 31

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 482 ISCKPVTSGAPSHTTKSA 429
           I+C+ VTS A +H  KSA
Sbjct: 13  IACQDVTSAAVNHQRKSA 30


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 62  VVNFIRRKKKWARHPKISEIYI-TGLLKKKV 151
           VVN I+RK+ W+R  + ++     G+ +KKV
Sbjct: 36  VVNNIKRKRWWSRPREPAQTTSKAGIHRKKV 66


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 617 CFNCEYSRETSFPLNILATNVPPF-LRTWV 531
           C+N  Y  +   P+ +   N PP  + +W+
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFPPRPMGSWI 132


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 617 CFNCEYSRETSFPLNILATNVPPF-LRTWV 531
           C+N  Y  +   P+ +   N PP  + +W+
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFPPRPMGSWI 132


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 617 CFNCEYSRETSFPLNILATNVPPF-LRTWV 531
           C+N  Y  +   P+ +   N PP  + +W+
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFPPRPMGSWI 132


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 617 CFNCEYSRETSFPLNILATNVPPF-LRTWV 531
           C+N  Y  +   P+ +   N PP  + +W+
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFPPRPMGSWI 132


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 617 CFNCEYSRETSFPLNILATNVPPF-LRTWV 531
           C+N  Y  +   P+ +   N PP  + +W+
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFPPRPMGSWI 132


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 211 GVLRAVDLCAAPGSWSQV 264
           GV+RAV  C A G++S +
Sbjct: 356 GVMRAVKRCNATGAFSWI 373


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 62  VVNFIRRKKKWARHPKISEIYI-TGLLKKKV 151
           V N I+RK+ W+R  + ++     G+ +KKV
Sbjct: 37  VYNNIKRKRSWSRPRESAQTTSKAGIHRKKV 67


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 124 IYLAYLWMSCPFFFSTNEI 68
           I L  L+  CP+FF  +E+
Sbjct: 157 IQLPPLYEMCPYFFFNSEV 175


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 124 IYLAYLWMSCPFFFSTNEI 68
           I L  L+  CP+FF  +E+
Sbjct: 157 IQLPPLYEMCPYFFFNSEV 175


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -3

Query: 465 YIWCTITYNQICFEALELFYYSICCFLFGNIPLNL 361
           Y W TI Y     EA +   +        N+PL L
Sbjct: 158 YAWSTIDYTYDSIEARDSAIFDGDFITENNLPLGL 192


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 62  VVNFIRRKKKWARHPKISEIYI-TGLLKKKV 151
           V N I+RK+ W+R  + ++     G+ +KKV
Sbjct: 158 VYNNIKRKRSWSRPREPAQTTSKAGIHRKKV 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,658
Number of Sequences: 438
Number of extensions: 3408
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)