Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12m22
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    31   0.14 
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     28   0.95 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   2.2  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   2.2  
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    27   2.9  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.9  

>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 531 SQCQRPICATCIEDKGFFNSLYNSLVRSPVLQP 433
           + C+RP C TC  D   F+S+YNS  +S    P
Sbjct: 181 TDCKRPTCMTCAID-DMFSSIYNSKNKSTFYGP 212


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 326 GNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLDIGCNTGDLTREL 466
           GN+ +YYS       I+     +  +L  +   LDIGCN G ++ ++
Sbjct: 7   GNYHSYYSMRGGTSIIDPRLKCLPDSLFYEASVLDIGCNNGTVSAQI 53


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 311 GAVKFGNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLDIG 436
           G +   N +N+YSF ++AE I  +  +  P   ED + ++ G
Sbjct: 184 GVLNVMNRLNFYSFGHIAENIGAIFESP-PVYVEDPFIVEDG 224


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 537 VLSQCQRPICATCIEDKGFFNSLYNSLVRSPVLQPMSRQYISSV 406
           +LS     IC  C+E+K     L++ L     L P+   Y + V
Sbjct: 97  ILSSDVWSICEACVENKTLMVKLWSFLDSEGPLNPLQASYFAKV 140


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 495 EDKGFFNSLYNSLVRSPVLQPMSRQYISS 409
           EDKGF ++L  S  ++   +P+SR  +SS
Sbjct: 733 EDKGFLDNLELSYFQASASRPVSRMSVSS 761


>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 477 NSLYNSLVRSPVLQPMSRQYISSVKVGNIFGCKLFILSATL*NE**FIKFPNLTAPGSLP 298
           ++L+N+L++SP L  ++ ++  S+K G I      I+            F  +  PGSLP
Sbjct: 72  SALFNALLQSPYLAALANEFNRSIKEGIICNFTRSIID----------PFSRIVLPGSLP 121


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 385 PKYVSHFNGRYILPGHWLQYW 447
           P+Y+  F    ILP  W+  W
Sbjct: 380 PRYIKLFGSNAILPNEWVTEW 400


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -3

Query: 249  VNVNMNVYFAIKELQGMNS*TIHGLKQHSRPVEFLIAGEHYL*TLGSTFLILNINIE 79
            ++ + +++   KE+QG     I  +  H R  E    G  ++  L +TF+ +N   E
Sbjct: 1101 LDCSADLHTIAKEIQGPGGPKIDDITWHYRIYENCFLGSEFVSWLANTFIGINTREE 1157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,556
Number of Sequences: 5004
Number of extensions: 56865
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)