Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12m18
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...   132   4e-32
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    59   6e-10
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    50   2e-07
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    29   0.42 
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    27   1.7  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   1.7  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   3.9  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   5.1  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    25   9.0  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   9.0  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  

>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score =  132 bits (319), Expect = 4e-32
 Identities = 67/132 (50%), Positives = 83/132 (62%)
 Frame = +1

Query: 172 IFSLYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGG 351
           I  LY + +  GE    G FL +TSPY WG LGIA  VA  ++GAA GI   G SI+GG 
Sbjct: 17  IVGLYMLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGA 76

Query: 352 VKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFG 531
           VKAPRIKTKNLIS+IFCE VAIY LI AIV S    K ++   +    + ++  G+ +F 
Sbjct: 77  VKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSA---KINDINPAGFYTKSHYYTGFALFW 133

Query: 532 AGLAVGLVNLFC 567
            G+ VGL NL C
Sbjct: 134 GGITVGLCNLIC 145


>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 33/102 (32%), Positives = 53/102 (51%)
 Frame = +1

Query: 256 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 435
           +G +G   ++  +  GAA G    GV I   GV  P +  KN I V+    +AIYGL+ +
Sbjct: 13  FGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVS 72

Query: 436 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNL 561
           +++SG L++    +           +G++  GAGL+VGL  L
Sbjct: 73  VLISGNLKQILSLY-----------SGFIQLGAGLSVGLAGL 103



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +1

Query: 265 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 444
           LG   SV L+ + A   I   G + V G  + PR+    ++ +IF E + +YGLI A++L
Sbjct: 92  LGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLL 151

Query: 445 S 447
           +
Sbjct: 152 N 152


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 30/102 (29%), Positives = 50/102 (49%)
 Frame = +1

Query: 256 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 435
           +G  G+  S+  S +GA  G    G  I   G   P I  K+LI V+    + +YGL+ +
Sbjct: 13  FGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMS 72

Query: 436 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNL 561
           ++++G +     P    S+      +G++   AGLAVGL  +
Sbjct: 73  VLIAGDMS----PDNDYSL-----FSGFIHLSAGLAVGLTGV 105


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 124 YFLSYLFVLLVGLAIPIF-SLYYVLNGKGEQISLGWFLENTSPY 252
           Y L  L   L+G+    F ++YY L  +  + +L  FL+NT PY
Sbjct: 302 YALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPY 345


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +1

Query: 181 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKA 360
           L + LN K  ++      +  S + WG      S+AL++VGA  GI   G   VG  ++ 
Sbjct: 785 LTFGLNSKDRKLDAKRLTKIVSGFHWGICQNVDSIALNIVGA--GIIRFGTQNVGCLLRI 842

Query: 361 PRIKTKNLI 387
                +NLI
Sbjct: 843 EPNYEQNLI 851


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 444 EHDSSDQTVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGD 271
           E D++   +N    A  +G  +L+ DS     +++   +S VD+H  S N     KG+
Sbjct: 22  EQDAASVKINSTR-ASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGE 78


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +1

Query: 91   TKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLN 198
            + ++N+N+ +R ++S++   +  +A    SLY+ LN
Sbjct: 2008 SSFINENMYLRLWISHIASWIYAVASASGSLYFSLN 2043


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 409 VAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAG 516
           ++I  +  A +LS  L  Y+EPF  +S KQ +   G
Sbjct: 74  LSIIAICFACLLSPSLRPYAEPFIFLSYKQPDGSYG 109


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 613 HPLEQHQSPRYQQQFHRIDS 554
           HPL QH++P ++ +   ++S
Sbjct: 109 HPLSQHKTPEFKHRKRNVES 128


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 390 GDQILSLDSRCFDTSSHYADTSSVDAH 310
           GD+ LS  S       H+AD +S D H
Sbjct: 652 GDEYLSAVSEFIQRCFHFADEASPDGH 678


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 530 PNITYPAIQFCCLTDTL 480
           PN  +    FCC TDTL
Sbjct: 56  PNARFSYSPFCCFTDTL 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,417
Number of Sequences: 5004
Number of extensions: 56888
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)