Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12m14
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   2.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   3.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.6  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 83  ETCLYQCDYCKLY*LIF 133
           +TC + CD C+ Y  ++
Sbjct: 554 DTCCWVCDQCEEYEYVY 570


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 83  ETCLYQCDYCKLY 121
           +TC + CD C+ Y
Sbjct: 464 DTCCWVCDQCEEY 476


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 137 SIVLQFVKIKHS 172
           ++V Q+VK+KHS
Sbjct: 441 AMVKQYVKVKHS 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,516
Number of Sequences: 438
Number of extensions: 1307
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)