Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12m09
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.1  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   2.6  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.6  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   3.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.5  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   4.6  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    26   4.6  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   8.0  

>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 193 KSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNILLAKNEVVCEDTVDIE 363
           KSK     ++  + +P+K G  ++         + S KK  L+ KN    EDT D+E
Sbjct: 80  KSKSKDSSKKEPVVVPKK-GTPKIFQENHKVKKVKSPKKEKLVGKNPAEKEDTTDVE 135


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 375 LFINFYIYCILTHYLV-LSQKYIFLNTV*VIFI 280
           LFI   ++C+LT Y V LSQ  +  + + V+F+
Sbjct: 475 LFIRLALFCVLTTYNVSLSQTILLTSIMSVVFL 507


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 675 PVINSYSVYKRPFLSDVITNC-FYRFYGHRFV 583
           P++ SY  YK+ F SDV   C    F+ H+F+
Sbjct: 606 PILTSYENYKQSF-SDVTIYCGTSMFHSHKFI 636


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 72  KKTLTLLPFKTEDTAGRLTMVNYGNRKYRRYCNSEAIVFC*IKRIVG 212
           KKTL L   K  D  G+L    +   KY     +E  V+  IK I G
Sbjct: 506 KKTLKLAENKEHDYIGKLQEREHALTKYESSLKAELEVYKQIKEIYG 552


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 626 SSQIVFIAFMAIDS*ASYSSLSTFFPSKLSLVVPINNEI 510
           SS I  + F+ +D  AS SS    FPS   LVV  N+E+
Sbjct: 688 SSMIDRVGFIVVDKSASNSSFGRSFPSCTVLVV--NSEL 724


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 550 GKKVLRLEYEAYESMAIKAIKTICDD 627
           G + LRL+Y   E  A++ +KT+ D+
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDE 300


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 292 LNSIKKNILLAKNEVVCEDTVDIEINEQDNL 384
           LNS KK   +   ++  ED+++  +N+++NL
Sbjct: 428 LNSEKKTFEILSTDIPAEDSMNSLLNDEENL 458


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 562 LRLEYEAYESMAIKAIKTICDDVXQKW 642
           L L Y+++E + +K  K IC D   +W
Sbjct: 453 LGLSYDSFEIINLKTGKDICPDEFNEW 479


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +1

Query: 538 DNFEGKKVLRLEYEAYESM----AIKAIKTICDDVXQKWPLVHGIAI 666
           +N E KK+  L  + Y S+    A +A+K I +D+    P++  +A+
Sbjct: 62  NNLELKKLCYLYLKIYASVKPTEAKRAVKLILNDIYSSNPMIRSLAL 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,812
Number of Sequences: 5004
Number of extensions: 49479
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)