Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12m09
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0320 + 2160311-2160892                                           69   3e-12
02_04_0237 + 21184480-21184809                                         55   6e-08
01_06_0012 + 25575196-25575198,25575769-25575945,25576034-255760...    29   2.7  

>02_01_0320 + 2160311-2160892
          Length = 193

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 37/84 (44%), Positives = 51/84 (60%)
 Frame = +1

Query: 457 RLSVEEISELVTDDSCGAISLFIGTTRDNFEGKKVLRLEYEAYESMAIKAIKTICDDVXQ 636
           RL +    + V D + GAI+ F GTTRD+FEG++V+ L YEAY +MA + +  I  +   
Sbjct: 28  RLDIARYVDHVRDLAAGAIATFEGTTRDSFEGRRVVELRYEAYGAMARRRLAAILREARA 87

Query: 637 KWPLVHGIAIYHRLGNVPCREASV 708
              L   +A+ HRLG VP  EASV
Sbjct: 88  AHSL-RRLAVAHRLGTVPAGEASV 110


>02_04_0237 + 21184480-21184809
          Length = 109

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = +1

Query: 166 VTVKLLFFAKSKELSGVRETSITLPR-KLGYQRLLNIICDKYNLNSIKKNILLAKNEVVC 342
           V VK+LFFA++++L+GV E  + +P        L  ++     L  I+++++LA NE   
Sbjct: 29  VKVKVLFFARARDLTGVTEAPVEVPAGSTAGDCLARVLAAFPRLEEIRRSMVLALNEEYA 88

Query: 343 EDTVDIEINEQDNLAVIPPLSGG 411
            +  D  + + D LA+IPP+SGG
Sbjct: 89  PE--DAAVGDGDELAIIPPISGG 109


>01_06_0012 +
           25575196-25575198,25575769-25575945,25576034-25576078,
           25576164-25576371,25576685-25576875,25577078-25577473
          Length = 339

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 139 MEIENIEDTVTVKLLFFA--KSKELSGVRETSITL-PRKLGYQRLLNIIC 279
           ++ ENI  T T+K + FA   S   SG+  T + L P ++ + RL N  C
Sbjct: 255 VQYENIRGTFTIKPVHFACSDSSPCSGITLTGVQLRPVQISHYRLNNPFC 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,542
Number of Sequences: 37544
Number of extensions: 262829
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)