Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12m08
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   409   e-116
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   409   e-116
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   390   e-111
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   288   3e-80
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    40   1e-05
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.7  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  409 bits (1007), Expect = e-116
 Identities = 193/206 (93%), Positives = 197/206 (95%)
 Frame = +3

Query: 3   ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 182
           ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY
Sbjct: 46  ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 105

Query: 183 SEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGK 362
           SE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK
Sbjct: 106 SETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGK 165

Query: 363 ADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 542
            +GKCLIEALDAILPP RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAP
Sbjct: 166 VEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAP 225

Query: 543 ANITTEVKSVEMHHEALQEAVPGDNV 620
           A +TTEVKSVEMHHEALQEAVPGDNV
Sbjct: 226 AGLTTEVKSVEMHHEALQEAVPGDNV 251


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  409 bits (1007), Expect = e-116
 Identities = 193/206 (93%), Positives = 197/206 (95%)
 Frame = +3

Query: 3   ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 182
           ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY
Sbjct: 103 ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162

Query: 183 SEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGK 362
           SE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK
Sbjct: 163 SETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGK 222

Query: 363 ADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 542
            +GKCLIEALDAILPP RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAP
Sbjct: 223 VEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAP 282

Query: 543 ANITTEVKSVEMHHEALQEAVPGDNV 620
           A +TTEVKSVEMHHEALQEAVPGDNV
Sbjct: 283 AGLTTEVKSVEMHHEALQEAVPGDNV 308


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  390 bits (960), Expect = e-111
 Identities = 183/206 (88%), Positives = 193/206 (93%)
 Frame = +3

Query: 3   ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 182
           ITGTSQADCAVLIVAAG GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPY
Sbjct: 103 ITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPY 162

Query: 183 SEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGK 362
           SE RFEEIKKEVSSYIKKIGYN A+VAFVPISGWHGDNMLEPS K PW+KGW+VERK+G 
Sbjct: 163 SEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGN 222

Query: 363 ADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 542
           ADGK LIEALDAILPP+RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V FAP
Sbjct: 223 ADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAP 282

Query: 543 ANITTEVKSVEMHHEALQEAVPGDNV 620
           A +TTEVKSVEMHHEAL EA+PGDNV
Sbjct: 283 AALTTEVKSVEMHHEALTEALPGDNV 308



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 616 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 509
           L PG     A   ++T++ SV M   A T  +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  288 bits (707), Expect = 3e-80
 Identities = 135/142 (95%), Positives = 137/142 (96%)
 Frame = +3

Query: 3   ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 182
           ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY
Sbjct: 30  ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 89

Query: 183 SEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGK 362
           SE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK
Sbjct: 90  SETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGK 149

Query: 363 ADGKCLIEALDAILPPARPTDK 428
            +GKCLIEALDAILPP RPTDK
Sbjct: 150 VEGKCLIEALDAILPPTRPTDK 171


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 40.3 bits (90), Expect = 1e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 564 KSVEMHHEALQEAVPGDNV 620
           KSVEMHHEAL EA+PGDNV
Sbjct: 1   KSVEMHHEALTEALPGDNV 19


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 317 FG*RLQHVVSVPSRNGHESDSSWV 246
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 160 WIPLNHHTVSPDLRKSRRKY 219
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 101 LTGLTVLRDTSFEFTGTGSYDEHSAISLR 15
           LTGLTVLR  +  +    S  E    S R
Sbjct: 257 LTGLTVLRTFNASYNSLDSLPEGLFASTR 285


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 212 LLDFLKSGLTVWWFSGIH 159
           L  F++SG+T  W S I+
Sbjct: 56  LSHFIESGITAIWLSPIN 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,414
Number of Sequences: 438
Number of extensions: 4182
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)