Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12l17
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.64 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +1

Query: 205 CSEILSLDKSCATRRRITEKEADTQCRQKIYPEIRSTYD*SWFPERRKSSSSVPSTRP 378
           CS +L+L  + A RR     EA  + RQ+ Y  IR   D    P      S VPS  P
Sbjct: 395 CSSLLNLPGNDARRRVEAALEAVEEERQREY-GIRVERDPILTPPSSNPVSPVPSPDP 451



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 205 CSEILSLDKSCATRRRITEKEADTQC 282
           CS+  S+ ++ +  RRI  KE   +C
Sbjct: 125 CSKSFSVKENLSVHRRIHTKERPYKC 150


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 122 KHKHNKRPIVWSRN*HDFPLIFINTNNFSQH 30
           KH H  RPI  S+N H    +F+  + F Q+
Sbjct: 542 KHDHQGRPISISKNQH----LFVELDQFIQN 568


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 211 HCNRESPAYDINTSLYQITWP 149
           H  R+S + D+N    Q++WP
Sbjct: 86  HGRRQSRSMDLNAHREQMSWP 106


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 441  SRAEILRLIYQGRF-LHSSVTLGALGLPLGRTTVMHLVPREHLPEPNSHDQRQ 596
            S  E +R + +G   +H + +    G+P   +T+ + V   HL  P   DQ+Q
Sbjct: 1047 SLVEAVRAVQRGEMSVHRAGSY--YGVP--HSTLEYKVKERHLMRPRKRDQKQ 1095


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +2

Query: 173 SVYVVCWALTVAVRSFLWINR 235
           +V+ +CW     +  + WI+R
Sbjct: 267 AVFFICWTPYYVMSLWYWIDR 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,880
Number of Sequences: 438
Number of extensions: 3564
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)