Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12k06
         (277 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   3.7  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   3.7  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   3.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   3.7  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   3.7  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   3.7  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   3.7  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   3.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   3.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   3.7  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   3.7  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   3.7  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   3.7  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   3.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   3.7  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    20   4.9  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    20   4.9  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    20   4.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   4.9  

>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 150 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 55
           +Y   H  K    EER+S N  S+ R   +NS
Sbjct: 18  RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 150 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 55
           +Y   H  K    EER+S N  S+ R   +NS
Sbjct: 18  RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 150 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 55
           +Y   H  K    EER+S N  S+ R   +NS
Sbjct: 18  RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 150 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 55
           +Y   H  K    EER+S N  S+ R   +NS
Sbjct: 18  RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 150 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 55
           +Y   H  K    EER+S N  S+ R   +NS
Sbjct: 18  RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 150 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 55
           +Y   H  K    EER+S N  S+ R   +NS
Sbjct: 18  RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 150 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 55
           +Y   H  K    EER+S N  S+ R   +NS
Sbjct: 18  RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 71  HLRLLWLLPEERSSLKEHL 127
           H R +WL+ +ER    E L
Sbjct: 38  HRREVWLIQQEREREHERL 56


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 71  HLRLLWLLPEERSSLKEHL 127
           H R +WL+ +ER    E L
Sbjct: 38  HRREVWLIQQEREREHERL 56


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 71  HLRLLWLLPEERSSLKEHL 127
           H R +WL+ +ER    E L
Sbjct: 38  HRREVWLIQQEREREHERL 56


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 71  HLRLLWLLPEERSSLKEHL 127
           H R +WL+ +ER    E L
Sbjct: 38  HRREVWLIQQEREREHERL 56


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 71  HLRLLWLLPEERSSLKEHL 127
           H R +WL+ +ER    E L
Sbjct: 38  HRREVWLIQQEREREHERL 56


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 71  HLRLLWLLPEERSSLKEHL 127
           H R +WL+ +ER    E L
Sbjct: 38  HRREVWLIQQEREREHERL 56


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 71  HLRLLWLLPEERSSLKEHL 127
           H R +WL+ +ER    E L
Sbjct: 38  HRREVWLIQQEREREHERL 56


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 71  HLRLLWLLPEERSSLKEHL 127
           H R +WL+ +ER    E L
Sbjct: 38  HRREVWLIQQEREREHERL 56


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 160 NKGKLWKDIKHKYE 201
           NK +LW  + +KY+
Sbjct: 97  NKPELWDSLANKYD 110


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 160 NKGKLWKDIKHKYE 201
           NK +LW  + +KY+
Sbjct: 97  NKPELWDSLANKYD 110


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 160 NKGKLWKDIKHKYE 201
           NK +LW  + +KY+
Sbjct: 97  NKPELWDSLANKYD 110


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 2  VIFLRKFSKCPCGLH*IVLFSNVHLRLL 85
          ++F+  F    CGL  + L   +HL++L
Sbjct: 11 LLFIFNFVFAVCGLGILTLGVLIHLQIL 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,969
Number of Sequences: 438
Number of extensions: 1578
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)