Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12k01
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 69 6e-13
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 67 2e-12
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 44 2e-05
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 29 0.42
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 1.7
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 5.1
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 25 6.8
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 6.8
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 25 6.8
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 6.8
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 9.0
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 9.0
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 68.9 bits (161), Expect = 6e-13
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Frame = +2
Query: 332 NFPGTMLYVILGTVKEVSIGPTSLMALFTLQICRELPI--------EFVVLLTFLSGCIV 487
+F G +Y I T K+VSIGP ++M+L T ++ + + L L+G I
Sbjct: 170 SFVGVAIYCIFATSKDVSIGPVAVMSLVTSKVIANVQAKDPNYDAAQIGTTLALLAGAIT 229
Query: 488 FVMGLLRLGFLVDLISPSVTSGFTSATAIIIVAGQVKGLIG 610
+GLLRLGF+++ I +GFT+ +A+ I+AGQV L+G
Sbjct: 230 CGLGLLRLGFIIEFIPVPAVAGFTTGSALNIMAGQVSSLMG 270
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 66.9 bits (156), Expect = 2e-12
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Frame = +2
Query: 332 NFPGTMLYVILGTVKEVSIGPTSLMALFTLQICRELPI--------EFVVLLTFLSGCIV 487
+F G +Y T K+VSIGP ++M+L T ++ + + L L+G I
Sbjct: 157 SFVGVAIYCFFATSKDVSIGPVAVMSLITAKVIANVMAKDETYTAPQIATCLALLAGAIT 216
Query: 488 FVMGLLRLGFLVDLISPSVTSGFTSATAIIIVAGQVKGLIG 610
+GLLRLGF+++ I +GFT+ +A+ I++GQV L+G
Sbjct: 217 CGIGLLRLGFIIEFIPVPAVAGFTTGSALNILSGQVPALMG 257
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 44.0 bits (99), Expect = 2e-05
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Frame = +2
Query: 341 GTMLYVILGTVKEVSIGPTSLMALFTLQICRE-------LPIEFVVLLT----FLSGCIV 487
G +LY + +SIGP + M L + + +P E +L+T F++G I
Sbjct: 117 GPILYCLFTACPLISIGPEAGMCLLIAENIHQRVLSKADVPQETAILVTGLIAFIAGIIN 176
Query: 488 FVMGLLRLGFLVDLISPSVTSGFTSATAIIIVAGQVKGLIGLSFV 622
GL RLGFL L+SP + G + ++II+ Q G S V
Sbjct: 177 LAAGLFRLGFLDALVSPVLLRGCILSISMIIMINQGSVFFGFSGV 221
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 29.5 bits (63), Expect = 0.42
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 458 LLTFLSGCIVFVMGLLRLGFLVDLISPSVTSGFTSATAIIIVAGQVK 598
L + L+G + F++G+LRLG L++ + G +V V+
Sbjct: 263 LSSILTGLVFFILGILRLGRLIEFFPRHILLGCIGGVGSFLVLTAVE 309
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 513 PNLKSPITKTIHPERNVS--STTNSMGSSRQI*RVNSAIKLVGPIDTS 376
PN KS TKT HPE + S S SM + + ++ I G +D S
Sbjct: 79 PNFKSVCTKTNHPESSSSRHSKKKSMENRKSSLYGSNGINSCGCVDIS 126
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 196 FLTNEFQDQERPKKNVKKGCNKANDCK*LKCNAHCMYWYSLLPH 65
FLT+ + + K+ ++ + + CK + H +Y SLLPH
Sbjct: 1100 FLTSFIEKERHTKQLAERLAARLDRCKTQRQWDHVVYALSLLPH 1143
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 101 ITFQLFTIICFITAFFHIFFRTFLVLELIREKRLHQNSPSITIPRTNT 244
I FQLFTI+ F + F IFF IR + P + R T
Sbjct: 156 ICFQLFTIVVF-SILFSIFFIALYTHHPIRPS-TGRREPDVPYTRVRT 201
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 80 VPIHTVSITFQLFTIICFITAF 145
+P+ T++++ FTI+CF+ F
Sbjct: 237 LPLGTINLSVTRFTILCFMQIF 258
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 263 KFIRSSWCLSVGSLYSVNFDVTVSHE*VPGP 171
KFI +W +VG Y ++F VTV E P
Sbjct: 133 KFIDPAWGFAVGIQYWLSFAVTVPLELTVAP 163
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +2
Query: 413 FTLQICRELP---IEFVVLLTFLSGCIVFVMGLLRLGFLV 523
FT + CRE+ + +LLTF VF+ +L L FLV
Sbjct: 21 FTSKRCREIDKKALLITILLTFFVSLCVFLSIILPLIFLV 60
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.0 bits (52), Expect = 9.0
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 603 SPFTCPATMMIAVADVKPLVTEGDIK-STRKPNLKSPITKTIHPERNVSSTTNSMGSSRQ 427
S F C A+ +D V+ K +T + SP TKTI+PE S++T S+ +S Q
Sbjct: 21 STFGCSASSTSVQSDTTNQVSVSCPKYTTIYTSGTSPDTKTIYPE---STSTKSITTSTQ 77
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 334 FSRYNAVRHPGYSQRGVDRSDELDGAVHPSDL 429
F RY +P Y+ ++RS+ L V PS L
Sbjct: 485 FERYLISSYPQYTMEDLNRSNGLPVIVSPSSL 516
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.0 bits (52), Expect = 9.0
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 603 SPFTCPATMMIAVADVKPLVTEGDIK-STRKPNLKSPITKTIHPERNVSSTTNSMGSSRQ 427
S F C A+ +D V+ K +T + SP TKTI+PE S++T S+ +S Q
Sbjct: 21 STFGCSASSTSVQSDTTNQVSVSCPKYTTIYTSGTSPDTKTIYPE---STSTKSITTSTQ 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,726
Number of Sequences: 5004
Number of extensions: 52334
Number of successful extensions: 174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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