Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12j22
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.53 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   3.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.6  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 343 YFFYPHTRLRKCTFRPSGWSSIHPVSRDQQSNKTTDQS 230
           Y  Y HT  +K     S   S  P SRD+ +   T ++
Sbjct: 67  YIKYSHTHEKKLVLERSKTKSKSPESRDRSNTSNTSKT 104


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 619 SGGVACLAYXGLSFPITKAGSYIGSL 696
           +G V+C     +  P+T + +YIG L
Sbjct: 44  AGNVSCSVSWEVHDPVTNSDTYIGFL 69


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 329 RIKEVSEGRPCDNCPELCPGFVSHAWRKT 415
           +++++  G P +N  E C    +HA  KT
Sbjct: 508 KLEDLEMGTPLENILESCQQDETHAPEKT 536


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 282 PFILSPVINNQTKRPTN 232
           P +LSP +NN    PT+
Sbjct: 194 PRVLSPPLNNNDATPTD 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,892
Number of Sequences: 438
Number of extensions: 3975
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)