Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12i18
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.84 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.5  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 151 DVETISPGNGSTYP-KPGQTVVVHYTGT 231
           D+ETI   N S YP +P Q V+ HY  T
Sbjct: 112 DIETIIRRN-SRYPLRPPQEVISHYRRT 138


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 537 HKWFFYEESCKNFKARMFFNQ*TLFNT*EFNVKNES 430
           H +  YE  C   + R+     + +NT E  V NES
Sbjct: 42  HTYIIYESLCGRHEKRLLNELLSSYNTLERPVANES 77


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 537 HKWFFYEESCKNFKARMFFNQ*TLFNT*EFNVKNES 430
           H +  YE  C   + R+     + +NT E  V NES
Sbjct: 42  HTYIIYESLCGRHEKRLLNELLSSYNTLERPVANES 77


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 187 KLIHFQVK*FPRRLPWFYNVKTVL 116
           K + FQ    P    W Y  KT+L
Sbjct: 129 KSVTFQTMTIPNHYLWLYKDKTIL 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,139
Number of Sequences: 438
Number of extensions: 3774
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)