Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12i04
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.8  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 338 GVQYVMSTDFT*LIYRLLANK 400
           GV Y +ST    L+Y +++NK
Sbjct: 334 GVFYYLSTTVNPLLYNIMSNK 354


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 56  YYFNEGNFNNRPISAIDHTLNTYCA 130
           Y FNE NF     +  D  +NT CA
Sbjct: 560 YNFNEVNFRILGANVNDLIMNTRCA 584


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +1

Query: 310 RDVDLISQRWRTICDVHGLHL 372
           R + ++ +RW+ + D +G H+
Sbjct: 320 RGIMMLPERWQKVIDQNGQHI 340


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 73  AFIKIICAAC 44
           AF++I+CA C
Sbjct: 400 AFVRILCACC 409


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 138 HTHAQYVFSVWSMAE 94
           H    Y FSVW M +
Sbjct: 346 HEKLSYAFSVWRMED 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,889
Number of Sequences: 438
Number of extensions: 3552
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)