Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12h20
         (137 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   2.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   2.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   2.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   2.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   2.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    18   9.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -1

Query: 137 FFFYVFKMIYSSYYV 93
           F+F++ K + + YY+
Sbjct: 257 FYFFLHKQVLNRYYL 271


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 51  AMNLQHGICLDFI 13
           AMN+  G+C+ FI
Sbjct: 362 AMNVWDGVCMCFI 374


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 51  AMNLQHGICLDFI 13
           AMN+  G+C+ FI
Sbjct: 331 AMNVWDGVCMCFI 343


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 51  AMNLQHGICLDFI 13
           AMN+  G+C+ FI
Sbjct: 382 AMNVWDGVCMCFI 394


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 51  AMNLQHGICLDFI 13
           AMN+  G+C+ FI
Sbjct: 331 AMNVWDGVCMCFI 343


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -1

Query: 137 FFFYVFKMIYSSYYV 93
           F+F++ K + + YY+
Sbjct: 257 FYFFLHKQVLNRYYL 271


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +3

Query: 18  NPNKFRAVNSLHI 56
           NP+ +  V++LH+
Sbjct: 85  NPDDYGGVDTLHV 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,557
Number of Sequences: 438
Number of extensions: 248
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)