Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12h06
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0974 + 23200053-23200167,23200184-23200665                       27   5.2  
09_04_0698 + 19573132-19573728                                         26   9.1  
03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484     26   9.1  
01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571     26   9.1  

>08_02_0974 + 23200053-23200167,23200184-23200665
          Length = 198

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -1

Query: 165 RDNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGS 52
           R  +   DGS        GA F+L D N G G   SGS
Sbjct: 93  RKKKSRRDGSTRKKEASEGARFALEDGNGGTGYVMSGS 130


>09_04_0698 + 19573132-19573728
          Length = 198

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 141 GSNDDGLRDNGALFSLFDDNNG--LGLDFSGSNRNTSG-DVDVHDEL 10
           G +DD    +G LF  FDD +     +D   SNR   G + ++ DE+
Sbjct: 133 GDDDDDDDVHGVLFGAFDDGDDEPSVIDVIRSNREDEGLEFNIDDEI 179


>03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484
          Length = 355

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 159 NRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNT 40
           +RG   G +DD  R  GA F   D+    G + SG  + +
Sbjct: 261 SRGESGGRDDDRRRPGGAQFDRADEETLAGGEVSGDGKKS 300


>01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571
          Length = 498

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 144 DGSNDDGLRDNGALFSLFDDNNGLGLD 64
           DG   +G  D G  FSL  D   LGLD
Sbjct: 29  DGEKSNGGEDGGLRFSLQFDPGKLGLD 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,427,932
Number of Sequences: 37544
Number of extensions: 53207
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)