Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12h06
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p...    27   4.8  
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p...    27   4.8  
Z11505-10|CAA77588.2|  590|Caenorhabditis elegans Hypothetical p...    26   8.3  
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    26   8.3  

>Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical
           protein C26D10.1 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 57  GSNRNTSGDVDVHDELHK 4
           G+ RN++G+VDVH  LHK
Sbjct: 269 GNLRNSNGNVDVHPLLHK 286


>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 165 RDNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGD 31
           +DN G  +G+ D     NG    L  D NG G   +  + N +GD
Sbjct: 540 KDNNGKGNGTGDGDGDGNGNGNGLTGDGNGTGDGDNNESGNGNGD 584


>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 165 RDNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGD 31
           +DN G  +G+ D     NG    L  D NG G   +  + N +GD
Sbjct: 540 KDNNGKGNGTGDGDGDGNGNGNGLTGDGNGTGDGDNNESGNGNGD 584


>Z11505-10|CAA77588.2|  590|Caenorhabditis elegans Hypothetical
           protein F59B2.11 protein.
          Length = 590

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 165 RDNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKR 1
           R+   GV+GSN+DG  +N       D   G G     + +N    VD  +E  KR
Sbjct: 31  RNGNNGVNGSNEDGENNN---VDGNDGKGGKGALSQDAIQNNDDLVDQAEEDRKR 82


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
            protein R10F2.1 protein.
          Length = 2779

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 147  VDGSNDDGLRDNGALFSLFDDNNGLGLD 64
            +  SN  G+R++G L+SL +    LG+D
Sbjct: 2363 IRASNRLGMRNDGLLYSLKEHQGKLGID 2390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,905,547
Number of Sequences: 27780
Number of extensions: 44181
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)