Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12h02
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    62   7e-11
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    28   1.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   5.5  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   5.5  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   9.7  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    25   9.7  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   9.7  

>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
 Frame = +2

Query: 224 EKDRIEHLIRGHYAVLASNNVGLKGSLVDELGYPRDDIDVYEVRHARHKIICLQNDHKKV 403
           +K  IE+ +     VL    V +   L+ E G+PR DIDV  +R ARH+II L+NDH+++
Sbjct: 10  KKREIENRLNELEGVLLKERVTMDTPLLTEDGFPRSDIDVPSIRTARHEIITLRNDHREL 69

Query: 404 MQLIERGIAKVYEDLIDSPGIDSEEINSCLNGYPV-FKK-DETVND-----------PTF 544
              I++ + KV+          ++E        P+ F   +  +ND             F
Sbjct: 70  EDQIKKVLEKVFSGFSKESLAANDETKLAQEADPLNFNAANYNMNDIISRSKILGRVKPF 129

Query: 545 ATISFVDKGSPAEEAGLRAHDELVQFGSV 631
             +  V   SPA+EAGL   DELV   +V
Sbjct: 130 CVVDSVAVESPAQEAGLCIGDELVHVQNV 158


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 425 IAKVYEDLIDSPGIDSEEINSCLNGYPVFKKDETVNDPTFATISFVDKGSPAEE 586
           + K  +D+ D+P +        +  +P+FKK +   D  F+  +F   G+P  E
Sbjct: 189 VLKNMDDIFDTPYVYESPAEPDMFSFPIFKKPDDEEDYQFSD-NFDAYGAPRSE 241


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +2

Query: 446 LIDSPGIDSEEINSCLNGYPVFKKDETVNDPTFATISF 559
           ++ +PG D + I +C+    +   +ET+ +  F T+ +
Sbjct: 666 IMQNPGNDWDMIRACIGSKEILVPEETIKNILFTTLEY 703


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 558 KLIVAKVGSLTVSSFLKTG*PFKHEFISSLSIPGLSIKSS 439
           KL +AK  S+T+ S   +     H F   LS+PG  IKS+
Sbjct: 703 KLDLAKANSITLKSEPSSA-VSTHSFEVHLSMPGTQIKSA 741


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +2

Query: 377 CLQNDHKKVMQLIERGIAKV-YEDLIDSPGIDSEEINSCLNGYPVFKKDETVNDPTFATI 553
           C  +D  K +  + + + K    +   S  + +E   SCL  YP+   +E      F   
Sbjct: 316 CSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSCLPLYPLLPVEEVEGMKKFVQT 375

Query: 554 SFVDKGSPAEEAGLRAHDE 610
              D   P  +  +RA +E
Sbjct: 376 MLYDSIYPFMQRCVRAWEE 394


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 452 DSPGIDSEEINSCLNGYPVFKKDETVNDPTFATISF 559
           + P +  E + S    Y   +   T+N PT AT+SF
Sbjct: 170 EGPPLSQERLYSIFRTYGKLRS-VTINSPTSATLSF 204


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 509 FKKDETVNDPTFATISFVDKGSP 577
           F +  TV+DP F  + F+  GSP
Sbjct: 380 FSEISTVDDPVFVVVIFLLVGSP 402


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 96  GYNYCNCK-FADLIRCIDFCFENALQNYEVY 7
           G + C C+ F D+   +++C    L +Y+VY
Sbjct: 714 GDDNCGCQVFEDVNSSLEYCENMLLDDYDVY 744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,724
Number of Sequences: 5004
Number of extensions: 51505
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)