Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12h02
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0147 - 15099406-15099446,15100171-15100341,15101032-151011...    64   7e-11
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782...    28   7.6  
10_07_0196 + 13978647-13979142,13979242-13980542                       28   7.6  

>09_04_0147 -
           15099406-15099446,15100171-15100341,15101032-15101139,
           15101974-15102034,15102126-15102266
          Length = 173

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
 Frame = +2

Query: 287 GLKGSLVDELGYPRDDIDVYEVRHARHKIICLQNDHKKVMQLIERGIAKVY-------ED 445
           G+ G LVD  G+PR DID+  V   R K+  L+NDHK +   IE+ +  ++       E 
Sbjct: 38  GITGGLVDAEGFPRSDIDIPAVLAQRRKLAELRNDHKDITNKIEKNLEVLHSTKLSRNEA 97

Query: 446 LIDSPGIDSEEINSCLNGYPVFKKDETVNDPTFATISFVDKGSPAEEAGLRAHDELVQFG 625
            I +       ++S L+     ++D     P FA I  +  GSPA   GL+  DE+V+FG
Sbjct: 98  SIPASSGTPASLHSGLSQNDPMEEDAVTRLP-FAIIDELTDGSPAAVDGLQLWDEIVKFG 156

Query: 626 SV 631
           +V
Sbjct: 157 NV 158


>11_02_0056 +
           7828453-7828717,7829425-7829427,7829658-7829912,
           7829997-7830124,7831063-7831207,7832178-7832275,
           7833253-7833395,7835119-7835239,7835492-7835584,
           7835712-7835828
          Length = 455

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 551 ISFVDKGSPAEEAGLRAHDELVQF 622
           +  V  GSPAE AG R  D +V+F
Sbjct: 384 VPMVTPGSPAEHAGFRPGDVVVEF 407


>10_07_0196 + 13978647-13979142,13979242-13980542
          Length = 598

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 419 RGIAKVYEDLIDSPGIDSEEINSCLNG-YPVFKKDETVNDPTFATISFVDKGSPAEE 586
           RGI   + D   SPGI+++   S  NG  P  +++ +V +P+ A ++   +G  + E
Sbjct: 264 RGIDSSWSDGAPSPGINAQTDESNANGRRPSLERNYSVIEPSDANLADEVEGESSPE 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,378,425
Number of Sequences: 37544
Number of extensions: 291134
Number of successful extensions: 709
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)