Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12f18
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   3.1  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.1  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    26   5.3  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   5.3  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   7.1  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 398 LLSSVYSIPFAVILHISNTFFFFFLLL 478
           L SS    PF V++H S  FF+   LL
Sbjct: 359 LTSSKTETPFVVLVHTSGQFFYLDFLL 385


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 484 GGRAHSPLDVKWLLEPIDIYN 546
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 478 WMGGRAHSPLDVKWLLEP 531
           W+GG  +   D +W+LEP
Sbjct: 88  WLGGSTNGEDDSEWILEP 105


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 403 QQSCM--VIKAHADFLIPLCI*PQHVDIKTLILVIFSVHDYSF 281
           ++SC+  ++KA A F +PL +  +  D+K++  +   + DY F
Sbjct: 607 EKSCLNGIMKAIAKFYVPLPLSYEESDVKSIRSLESCLEDYLF 649


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 39  IMRRTIHCGVLQETPTSSSGKIQPDDDTIKKKILML 146
           ++   +H G ++   T +  +IQP D  ++K  L+L
Sbjct: 328 LLAALLHLGNIEVCATRNEAQIQPGDGYLQKAALLL 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,373
Number of Sequences: 5004
Number of extensions: 56720
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)