Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12f18
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0546 - 34646946-34647289,34647542-34647608                       28   7.3  
10_08_0609 - 19196705-19196845,19196927-19196984,19197072-191971...    27   9.7  

>03_06_0546 - 34646946-34647289,34647542-34647608
          Length = 136

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 406 LCVFHSICRNSSHIKHXXXXXXIAWMGGRAHSP 504
           LC+  ++C+   H+K       + W+G   H P
Sbjct: 95  LCLQCALCQEYRHLKSLGYKPSLGWLGNNQHVP 127


>10_08_0609 -
           19196705-19196845,19196927-19196984,19197072-19197142,
           19197352-19197428,19197500-19197582,19197659-19197718,
           19198007-19198142,19198247-19198317,19198560-19198651,
           19198785-19198882,19199012-19199164,19199254-19199419,
           19200112-19200510,19200592-19200673,19200739-19200962
          Length = 636

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +2

Query: 5   ILIHIYILNFAYYEEDHSL----WRTTGDAYIQQWKN 103
           + + I +  FA+ EED+      W+T  + YI QW++
Sbjct: 376 LAVAILVTGFAFTEEDYMKPWEGWKTNLERYILQWES 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,575,111
Number of Sequences: 37544
Number of extensions: 344184
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)