Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12f15
(284 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 0.52
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 1.6
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra... 25 2.8
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 24 4.9
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 24 4.9
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 24 4.9
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 23 8.5
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 23 8.5
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 23 8.5
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 23 8.5
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.1 bits (57), Expect = 0.52
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 12 DMASFFTNNMKFADVMIYRKDL-GMSNTSKTVDTSEMVMMKDDLTY-LDSDMLVKR 173
D +FTN+ +FAD++I + NTS S +K D++Y SD+ VKR
Sbjct: 45 DRTGYFTNSTRFADLIIEKATFTEFGNTS-----SFPKFLKLDISYETSSDLEVKR 95
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 1.6
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +2
Query: 170 EDLQRRHDDEQH--DELITRHC 229
ED Q RH+DE+H LI HC
Sbjct: 916 EDPQSRHNDERHLYSVLIDGHC 937
>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
translocase complex subunit Tim21 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 24.6 bits (51), Expect = 2.8
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 116 LRGVHGLAGVRHAEVFSVDHYVSELHVVSEEAR-HV 12
LR HG+ R + V+H V + H++ E + HV
Sbjct: 133 LRRTHGILTSRVWDHHGVEHLVLQFHLIGNERKGHV 168
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 23.8 bits (49), Expect = 4.9
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 105 DTSEMVMMKDDLTYLDSDMLVKRTYKDVXXXXXXXXXXHDIV 230
D S +V + DD+ +D L + T + + HDIV
Sbjct: 756 DRSLIVALPDDVAMVDKSSLRRPTRESICTPVKKLRSKHDIV 797
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 23.8 bits (49), Expect = 4.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 65 QKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQED 175
+KR ++Q RG+ G DE H+G ED
Sbjct: 604 EKRELEKQYQNRRGYYDVGKDESYLANSARPHSGYED 640
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 23.8 bits (49), Expect = 4.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 92 GVRHAEVFSVDHYVSELHVVSE 27
G+RH E++ D V EL +V E
Sbjct: 247 GIRHKEMYFEDGTVPELSLVKE 268
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 23.0 bits (47), Expect = 8.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 68 KRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQE 172
K+P + R L G +++PG+GH QE
Sbjct: 64 KKPNSAVRKVARVRLSTGRSV-TAYIPGIGHNAQE 97
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 23.0 bits (47), Expect = 8.5
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 68 KRPRHVEHQQDRGHL 112
K+P +VE +D+GH+
Sbjct: 1900 KKPGYVEKNKDKGHM 1914
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 23.0 bits (47), Expect = 8.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 15 MASFFTNNMKFADVMIYRKDLGMSNTSKTVDTSEMVMMKDDLT 143
MAS T+ ++AD + D+G S+ S V+T + D+T
Sbjct: 148 MASTSTSKSRYADSLSTLHDMGFSDDS--VNTHALEETNGDVT 188
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 23.0 bits (47), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 173 PLDQHVRVQVGEIVLHHDHLRGVHGLA 93
PLD H+R +VG+++ GLA
Sbjct: 391 PLDVHIRRKVGKLIKRRASAGNQGGLA 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 814,516
Number of Sequences: 5004
Number of extensions: 13137
Number of successful extensions: 40
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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