Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12f15
(284 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 30 0.31
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 30 0.31
U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protei... 28 0.94
U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein. 28 0.94
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 1.2
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 27 2.2
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 2.2
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 2.9
AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical ... 27 2.9
U23523-8|AAC46563.1| 87|Caenorhabditis elegans Hypothetical pr... 26 3.8
Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical pr... 26 5.0
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 26 5.0
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 26 5.0
U41548-2|AAA83204.1| 399|Caenorhabditis elegans Hypothetical pr... 26 5.0
U10438-6|AAA19087.1| 429|Caenorhabditis elegans Hypothetical pr... 26 5.0
Z81104-3|CAD89749.1| 660|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 25 6.6
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 25 6.6
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 25 6.6
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z99281-10|CAB16516.1| 473|Caenorhabditis elegans Hypothetical p... 25 8.7
U39674-2|AAY86211.1| 94|Caenorhabditis elegans Hypothetical pr... 25 8.7
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 29.9 bits (64), Expect = 0.31
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 62 LQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 208
+ K + H GH D +D G SH G G + HD +HD
Sbjct: 348 IHKSEGNHSHDNGHGHSHDHNDHGHSH--GHDDHGHDSHGHSHDHNEHD 394
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 29.9 bits (64), Expect = 0.31
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 62 LQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 208
+ K + H GH D +D G SH G G + HD +HD
Sbjct: 366 IHKSEGNHSHDNGHGHSHDHNDHGHSH--GHDDHGHDSHGHSHDHNEHD 412
>U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protein
17 protein.
Length = 277
Score = 28.3 bits (60), Expect = 0.94
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 65 QKRPRHVEHQ--QDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 211
Q+ H +HQ QD+ L D + P H G +D Q + + H +
Sbjct: 124 QEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQD 174
>U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein.
Length = 293
Score = 28.3 bits (60), Expect = 0.94
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 65 QKRPRHVEHQ--QDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 211
Q+ H +HQ QD+ L D + P H G +D Q + + H +
Sbjct: 124 QEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQD 174
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = +2
Query: 74 PRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 205
P H EH + + H EG H H + + RH E H
Sbjct: 368 PAHHEHHEHKDGAHHEHKEGEHH-EHAAHHDEHGVHHRHHGEHH 410
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +2
Query: 104 GHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 211
GH G H+ G H G H +D + H H +
Sbjct: 687 GHHGAHHEHGAHH--GAHHGHHDDKENHHHHGHHSK 720
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform e protein.
Length = 2702
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 75 LGMSNTSKTVDTSEMVMMKDDLTYLDSDMLVKRTYKDV 188
L +S T ++ S DD TY+ SD+L +R+ V
Sbjct: 261 LNISETRADMEMSRQDAFSDDATYVASDILEERSLSTV 298
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 75 LGMSNTSKTVDTSEMVMMKDDLTYLDSDMLVKRTYKDV 188
L +S T ++ S DD TY+ SD+L +R+ V
Sbjct: 5107 LNISETRADMEMSRQDAFSDDATYVASDILEERSLSTV 5144
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
H06O01.2 protein.
Length = 1461
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 59 DLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDELITRH 226
D ++R R + +++RG H EG S H ++ + H EQH E RH
Sbjct: 1407 DHKERDREKDRERNRGERRMDHGEGTSKDHHREH-HKDHHKDHHHREQHKEKNRRH 1461
>AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical
protein Y37E3.8a protein.
Length = 145
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 101 RGHLGDGH---DEGRSHLPGLGHAGQEDLQRRHDDEQH 205
RGH+ GH + R H G G+AG + R + D+ H
Sbjct: 12 RGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYH 49
>U23523-8|AAC46563.1| 87|Caenorhabditis elegans Hypothetical
protein F53A9.8 protein.
Length = 87
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +2
Query: 14 HGELLH*QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHD 193
HG+ H H +D H EH D H+ D + G AG+ + +H
Sbjct: 8 HGDGDHHDH-----HDEHHHEDHHEHGADGEHVHHAGDHCDTQHGGNHQAGEHCAKTQHQ 62
Query: 194 DEQHDE 211
D +H E
Sbjct: 63 DGEHHE 68
>Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical
protein H13N06.5 protein.
Length = 462
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 122 HDEGRSHLPGLGHAGQEDLQRRHDDEQHDELITRH 226
HD G +H GHA H HDE H
Sbjct: 76 HDHGHAHDHDHGHAHDHGHAHDHHGHSHDEEEDHH 110
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/59 (23%), Positives = 22/59 (37%)
Frame = +2
Query: 35 QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 211
QH+ + Q+R +H QQ+R + H H+ Q Q + H E
Sbjct: 651 QHQQQQERQQQERQQHERQQQERQQQDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHE 709
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/59 (23%), Positives = 22/59 (37%)
Frame = +2
Query: 35 QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 211
QH+ + Q+R +H QQ+R + H H+ Q Q + H E
Sbjct: 651 QHQQQQERQQQERQQHERQQQERQQQDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHE 709
>U41548-2|AAA83204.1| 399|Caenorhabditis elegans Hypothetical
protein M02F4.1 protein.
Length = 399
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 125 DEGRSHLPGLGHAGQEDLQRRHDDEQHDELITR 223
+E +SH G +DL+ ++DE +E+ +R
Sbjct: 167 EEKKSHRRGTSKCRSQDLEYDYEDEDREEMKSR 199
>U10438-6|AAA19087.1| 429|Caenorhabditis elegans Hypothetical
protein B0280.9 protein.
Length = 429
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 53 RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGH 160
RN R VE + G++ G+D+GR H+ + H
Sbjct: 390 RNGKVTHARCVEFSPNGGYMAVGNDDGRLHVFEIHH 425
>Z81104-3|CAD89749.1| 660|Caenorhabditis elegans Hypothetical
protein M199.5 protein.
Length = 660
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 98 DRGHLGDGHDEGRSHLPGLGHAGQEDLQ 181
D+G GD D+G + PG+G G Q
Sbjct: 90 DKGDTGDKGDKGDTGAPGVGVKGDPGAQ 117
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 125 DEGRSHLPGLGHAGQEDLQRRHDD 196
+EG+S PG GH + + + H+D
Sbjct: 232 EEGKSSSPGNGHRDESNGDKDHED 255
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 125 DEGRSHLPGLGHAGQEDLQRRHDD 196
+EG+S PG GH + + + H+D
Sbjct: 523 EEGKSSSPGNGHRDESNGDKDHED 546
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 125 DEGRSHLPGLGHAGQEDLQRRHDD 196
+EG+S PG GH + + + H+D
Sbjct: 538 EEGKSSSPGNGHRDESNGDKDHED 561
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 125 DEGRSHLPGLGHAGQEDLQRRHDD 196
+EG+S PG GH + + + H+D
Sbjct: 538 EEGKSSSPGNGHRDESNGDKDHED 561
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 125 DEGRSHLPGLGHAGQEDLQRRHDD 196
+EG+S PG GH + + + H+D
Sbjct: 232 EEGKSSSPGNGHRDESNGDKDHED 255
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 125 DEGRSHLPGLGHAGQEDLQRRHDD 196
+EG+S PG GH + + + H+D
Sbjct: 523 EEGKSSSPGNGHRDESNGDKDHED 546
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 125 DEGRSHLPGLGHAGQEDLQRRHDD 196
+EG+S PG GH + + + H+D
Sbjct: 538 EEGKSSSPGNGHRDESNGDKDHED 561
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 125 DEGRSHLPGLGHAGQEDLQRRHDD 196
+EG+S PG GH + + + H+D
Sbjct: 538 EEGKSSSPGNGHRDESNGDKDHED 561
>Z99281-10|CAB16516.1| 473|Caenorhabditis elegans Hypothetical
protein Y57G11C.15 protein.
Length = 473
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 235 LGTMSCDQFIMLLIIMTSL*VLLTSMSESR*VRSSFIMTISEVSTVLLVFDMPR 74
+ T S D F L +IM S L + S V S IM + + ++ V D P+
Sbjct: 54 MSTDSADPFYWLRVIMASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK 107
>U39674-2|AAY86211.1| 94|Caenorhabditis elegans Hypothetical
protein C06E2.9 protein.
Length = 94
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 59 DLQKRPRHVEHQQDRGHLGDGHDEGRS 139
D+ + RHVEHQ + L DGH R+
Sbjct: 42 DMHRFRRHVEHQ--KHSLNDGHLHSRN 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,552,023
Number of Sequences: 27780
Number of extensions: 78517
Number of successful extensions: 295
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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