Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12f13
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0169 - 9123684-9124823,9125408-9125594,9126379-9126476,912...    31   0.92 
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...    29   3.7  
12_01_0099 + 767474-767514,767622-767751                               28   6.5  
02_03_0264 + 17059279-17059638,17060226-17060260,17060307-170603...    28   6.5  
05_03_0168 - 9116648-9117775,9118699-9118885,9119724-9119821,911...    27   8.5  
03_05_0247 + 22339443-22339633,22340415-22340748,22341589-223417...    27   8.5  

>05_03_0169 -
           9123684-9124823,9125408-9125594,9126379-9126476,
           9127124-9127182,9128748-9129081
          Length = 605

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 228 GHVLFTLDSTISSLIR--PPLCVAVITSRESVNIVSEF*MTPGAIV 97
           G  LFTL S + ++ +  PP+C+  + S + V +V  F  + G  V
Sbjct: 557 GEGLFTLPSALLNMFKVLPPMCMKFLPSGQEVEVVDSFLNSSGGTV 602


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 137 LTDSLEVITATHNGGLINELMVESNVNKTCPVDL 238
           ++DS  ++T  H+  L+N++ VE  +    PVD+
Sbjct: 652 ISDSTMIVTTVHDKQLVNDIPVEKLLVHDVPVDI 685


>12_01_0099 + 767474-767514,767622-767751
          Length = 56

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 356 ESRELLYDRLYDT-TCPRVPTLCNER 430
           + R++ + RL DT T P+VP  CN R
Sbjct: 27  KKRDVAHSRLSDTPTTPKVPNRCNSR 52


>02_03_0264 +
           17059279-17059638,17060226-17060260,17060307-17060385,
           17060580-17061123,17061328-17061404
          Length = 364

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 401 PRVPTLCNERSCLGSLMAIPGRGDV 475
           P++P  CN RSC  SL  +P  GD+
Sbjct: 17  PQIPNPCNFRSC--SLTTVPPAGDL 39


>05_03_0168 -
           9116648-9117775,9118699-9118885,9119724-9119821,
           9119948-9120114,9122242-9122578
          Length = 638

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 228 GHVLFTLDSTISSL--IRPPLCVAVITSRESVNIVSEF 121
           G  LFTL S + ++  ++PP+C+  ++  E V     F
Sbjct: 592 GEGLFTLPSALLNMFKVQPPMCMKFLSGGEEVEAADSF 629


>03_05_0247 +
           22339443-22339633,22340415-22340748,22341589-22341738,
           22341832-22342080,22342171-22342257,22342346-22342424,
           22342518-22342624,22342725-22342849,22342940-22343027
          Length = 469

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 356 ESRELLYDRLYDTTCPRVPTL-CNERSCLGSLMAIPGRGDVPRDPEEVLNDAKDFLGQYF 532
           ++R L Y  ++ T     PT+ C E       +A  GRG VP  P+ +L    D LG+  
Sbjct: 59  KARRLRYGSVFRTHILGCPTVVCMEAELNRRALASEGRGFVPGYPQSML----DILGR-- 112

Query: 533 ASIRRANTPAHEA 571
            +I     P H A
Sbjct: 113 NNIAAVQGPLHRA 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,170,956
Number of Sequences: 37544
Number of extensions: 289947
Number of successful extensions: 701
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)