Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12f11
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0741 - 21107566-21107838,21107964-21108102,21108189-211084...    27   4.3  

>07_03_0741 -
           21107566-21107838,21107964-21108102,21108189-21108426,
           21108629-21108836,21108945-21109066,21109146-21109271,
           21109356-21109774,21109844-21110268
          Length = 649

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 329 IGDCNEGT*NYYCPNQTFTNNI 264
           I DC+EG  N Y  N TF  N+
Sbjct: 24  IADCDEGVGNTYVANSTFEANL 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,251,446
Number of Sequences: 37544
Number of extensions: 123996
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)