Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12f11
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF025471-7|AAB71066.3|  161|Caenorhabditis elegans Hypothetical ...    28   3.0  
AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine re...    27   6.9  

>Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical
           protein C35D6.9a protein.
          Length = 304

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 257 KYIWTLYLLYLIPKIFL 207
           KYIW LYL+++I  IF+
Sbjct: 138 KYIWALYLVFIIKDIFI 154


>AF025471-7|AAB71066.3|  161|Caenorhabditis elegans Hypothetical
           protein R52.9 protein.
          Length = 161

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = +2

Query: 290 DNNNFKC---LRYNLQWNL 337
           D +NFKC   +RYN+ WNL
Sbjct: 20  DGDNFKCDNEVRYNIPWNL 38


>AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine
           receptor, class z protein70 protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 290 PNQTFTNNILIKYIWTLYLLYLIPKIFLNFIKRLTL 183
           P  T   N L+  IW LY++++I ++ +  + R T+
Sbjct: 127 PYFTSARNSLLDKIWALYIVHVIKELSILVVVRRTV 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,905,177
Number of Sequences: 27780
Number of extensions: 134105
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)